KCC002309A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002309A_C01 KCC002309A_c01
ctgccgtcggcacacaacaaatggagaagtGGGGCACAAAATTAGGAGCAAACGATAATG
TTTTCGTGAGTAGCTGCGGGGCTACAGTGTCAATAGTGTTTTAGTGCATCTGGAAGCTGA
TCCCCGTTCAGCGACGGGGTCTTCGGAGCAGAGTACCGACCGCTTACTGGGTCGGCTGTA
CCGGCCCGTCCGGCCGGCGTGTGGTGACGTTCTGGTCTTCTTGTGGTCCCGGAGCCCGTT
GGCCCCCGACGACTCTTCCTCAACGTGACTTTTGCACGGGTGCTAGAACGGTCCTCTACG
CTGGGCATGCATGGGGATTTGGGGGTGGGTTCAGCTGGCGCCGGATTCCCATCTCAACTA
GACACCGCTCCCGACTAGGGGGCAAGTTGGCATGCGGAGGTGGGGACCGCATGCTACCAT
AGTGCGGGATATGATGGTGCGGGAGATGATGTTGTTGTTGACTTGTCCTGCGCGCCCTCC
TCATGCAGACCGAACTGTCCATCCGGGCGATGCAAGAGGCATGGGCTGGCATTGCCGGGC
GTGTGATTnTGGACGGTTGCATGTGCGGCCTGGTGGGCAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002309A_C01 KCC002309A_c01
         (582 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL39472.2| LD04591p [Drosophila melanogaster]                      40  0.031
ref|NP_651542.1| CG6051-PA [Drosophila melanogaster] gi|23180020...    40  0.031
gb|AAO25080.1| AT11823p [Drosophila melanogaster]                      40  0.031
ref|NP_115642.1| hypothetical protein DKFZp434G118 [Homo sapiens...    39  0.034
emb|CAD39047.1| hypothetical protein [Homo sapiens]                    39  0.034

>gb|AAL39472.2| LD04591p [Drosophila melanogaster]
          Length = 552

 Score = 39.7 bits (91), Expect = 0.031
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 475 ARRTSQQQHHLPHHHIPHYGSMRSPPPHANLPPSRERCLVEMGIRRQLNP 326
           + R  Q+ HH  HH  PH    R P PH      R+RC +E     ++ P
Sbjct: 143 SHRHHQRHHHHHHHRHPHQHQHRQPHPHRTTRSGRKRCSLEAADPERIQP 192

>ref|NP_651542.1| CG6051-PA [Drosophila melanogaster] gi|23180020|gb|AAF56673.2|
           CG6051-PA [Drosophila melanogaster]
          Length = 980

 Score = 39.7 bits (91), Expect = 0.031
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 475 ARRTSQQQHHLPHHHIPHYGSMRSPPPHANLPPSRERCLVEMGIRRQLNP 326
           + R  Q+ HH  HH  PH    R P PH      R+RC +E     ++ P
Sbjct: 571 SHRHHQRHHHHHHHRHPHQHQHRQPHPHRTTRSGRKRCSLEAADPERIQP 620

>gb|AAO25080.1| AT11823p [Drosophila melanogaster]
          Length = 798

 Score = 39.7 bits (91), Expect = 0.031
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 475 ARRTSQQQHHLPHHHIPHYGSMRSPPPHANLPPSRERCLVEMGIRRQLNP 326
           + R  Q+ HH  HH  PH    R P PH      R+RC +E     ++ P
Sbjct: 389 SHRHHQRHHHHHHHRHPHQHQHRQPHPHRTTRSGRKRCSLEAADPERIQP 438

>ref|NP_115642.1| hypothetical protein DKFZp434G118 [Homo sapiens]
            gi|12053293|emb|CAB66832.1| hypothetical protein [Homo
            sapiens]
          Length = 939

 Score = 39.3 bits (90), Expect = 0.040
 Identities = 36/135 (26%), Positives = 52/135 (37%), Gaps = 5/135 (3%)
 Frame = -3

Query: 571  RPHMQPSXITR--PAMPAHASCIARMDSSVCMRRARRTSQQQHHLP---HHHIPHYGSMR 407
            R H  PS      P+  +H     R   S   RR R  SQ+ H  P    HH P   S R
Sbjct: 615  RSHRSPSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKRSHR 674

Query: 406  SPPPHANLPPSRERCLVEMGIRRQLNPPPNPHACPA*RTVLAPVQKSR*GRVVGGQRAPG 227
            SP   ++  PS ER       R   +P    H  P+ R+  +P ++S         R+P 
Sbjct: 675  SPARRSHRSPS-ERSHHSPSERSHHSPSERRHHSPSERSHCSPSERSHCSPSERRHRSPS 733

Query: 226  PQEDQNVTTRRPDGP 182
             +   + + +    P
Sbjct: 734  ERRHHSPSEKSHHSP 748

 Score = 36.6 bits (83), Expect = 0.26
 Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
 Frame = -3

Query: 565 HMQPSXIT--RPAMPAHASCIARMDSSVCMRRARRTSQQQHHLP---HHHIPHYGSMRSP 401
           H  PS  +   P+   H S   R   S+  R     SQ+ H  P    HH P   S RSP
Sbjct: 553 HSSPSERSWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSP 612

Query: 400 PPHANLPPSRERCLVEMGIRRQLNPPPNPHACPA*RTVLAPVQKSR*GRVVGGQRAPGPQ 221
              ++  PS ER       R    P    H  P+ R   +P Q+S  G       +P  +
Sbjct: 613 SERSHRSPS-ERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKR 671

Query: 220 EDQNVTTRRPDGP 182
             ++   R    P
Sbjct: 672 SHRSPARRSHRSP 684

 Score = 32.3 bits (72), Expect(2) = 0.034
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
 Frame = -3

Query: 571 RPHMQPSXITR--PAMPAHASCIARMDSSVCMRRARRTSQQQHHLP---HHHIPHYGSMR 407
           R H  PS      P+  +H S   R   S   RR R  S+++HH P    HH P   S  
Sbjct: 695 RSHHSPSERRHHSPSERSHCSPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPSERSHH 754

Query: 406 SPPP---HANLPPSRERCL 359
           SP     H+ L  SR   L
Sbjct: 755 SPSERRRHSPLERSRHSLL 773

 Score = 31.6 bits (70), Expect = 8.4
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = -2

Query: 341 APAEPTPKSPCMPSVEDRSSTRAKVTLRKSRRGPTGSGTTRRPERHHTPAGRAGTADPVS 162
           +P+E + +SP   S    S  R +   ++S RGP+        ER H    +     P  
Sbjct: 603 SPSERSHRSPSERSHRSPSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSE 662

Query: 161 GRYSAP-----KTPSLNGDQLPDALKHY 93
            R+ +P     ++P+    + P    H+
Sbjct: 663 RRHHSPSKRSHRSPARRSHRSPSERSHH 690

 Score = 26.2 bits (56), Expect(2) = 0.034
 Identities = 23/88 (26%), Positives = 30/88 (33%), Gaps = 3/88 (3%)
 Frame = -2

Query: 329  PTPKSPCMPSVEDRSSTRAKVT---LRKSRRGPTGSGTTRRPERHHTPAGRAGTADPVSG 159
            P  +S C PS     S+  K       +S R P+G    R  ER H              
Sbjct: 811  PLERSRCSPSERRGHSSSGKTCHSPSERSHRSPSGMRQGRTSERSH-------------- 856

Query: 158  RYSAPKTPSLNGDQLPDALKHY*HCSPA 75
            R S  +T     +  P       HCSP+
Sbjct: 857  RSSCERTRHSPSEMRPGRPSGRNHCSPS 884

>emb|CAD39047.1| hypothetical protein [Homo sapiens]
          Length = 845

 Score = 39.3 bits (90), Expect = 0.040
 Identities = 36/135 (26%), Positives = 52/135 (37%), Gaps = 5/135 (3%)
 Frame = -3

Query: 571 RPHMQPSXITR--PAMPAHASCIARMDSSVCMRRARRTSQQQHHLP---HHHIPHYGSMR 407
           R H  PS      P+  +H     R   S   RR R  SQ+ H  P    HH P   S R
Sbjct: 521 RSHRSPSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKRSHR 580

Query: 406 SPPPHANLPPSRERCLVEMGIRRQLNPPPNPHACPA*RTVLAPVQKSR*GRVVGGQRAPG 227
           SP   ++  PS ER       R   +P    H  P+ R+  +P ++S         R+P 
Sbjct: 581 SPARRSHRSPS-ERSHHSPSERSHHSPSERRHHSPSERSHCSPSERSHCSPSERRHRSPS 639

Query: 226 PQEDQNVTTRRPDGP 182
            +   + + +    P
Sbjct: 640 ERRHHSPSEKSHHSP 654

 Score = 36.6 bits (83), Expect = 0.26
 Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
 Frame = -3

Query: 565 HMQPSXIT--RPAMPAHASCIARMDSSVCMRRARRTSQQQHHLP---HHHIPHYGSMRSP 401
           H  PS  +   P+   H S   R   S+  R     SQ+ H  P    HH P   S RSP
Sbjct: 459 HSSPSERSWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSP 518

Query: 400 PPHANLPPSRERCLVEMGIRRQLNPPPNPHACPA*RTVLAPVQKSR*GRVVGGQRAPGPQ 221
              ++  PS ER       R    P    H  P+ R   +P Q+S  G       +P  +
Sbjct: 519 SERSHRSPS-ERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKR 577

Query: 220 EDQNVTTRRPDGP 182
             ++   R    P
Sbjct: 578 SHRSPARRSHRSP 590

 Score = 32.3 bits (72), Expect(2) = 0.034
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
 Frame = -3

Query: 571 RPHMQPSXITR--PAMPAHASCIARMDSSVCMRRARRTSQQQHHLP---HHHIPHYGSMR 407
           R H  PS      P+  +H S   R   S   RR R  S+++HH P    HH P   S  
Sbjct: 601 RSHHSPSERRHHSPSERSHCSPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPSERSHH 660

Query: 406 SPPP---HANLPPSRERCL 359
           SP     H+ L  SR   L
Sbjct: 661 SPSERRRHSPLERSRHSLL 679

 Score = 31.6 bits (70), Expect = 8.4
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = -2

Query: 341 APAEPTPKSPCMPSVEDRSSTRAKVTLRKSRRGPTGSGTTRRPERHHTPAGRAGTADPVS 162
           +P+E + +SP   S    S  R +   ++S RGP+        ER H    +     P  
Sbjct: 509 SPSERSHRSPSERSHRSPSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSE 568

Query: 161 GRYSAP-----KTPSLNGDQLPDALKHY 93
            R+ +P     ++P+    + P    H+
Sbjct: 569 RRHHSPSKRSHRSPARRSHRSPSERSHH 596

 Score = 26.2 bits (56), Expect(2) = 0.034
 Identities = 23/88 (26%), Positives = 30/88 (33%), Gaps = 3/88 (3%)
 Frame = -2

Query: 329 PTPKSPCMPSVEDRSSTRAKVT---LRKSRRGPTGSGTTRRPERHHTPAGRAGTADPVSG 159
           P  +S C PS     S+  K       +S R P+G    R  ER H              
Sbjct: 717 PLERSRCSPSERRGHSSSGKTCHSPSERSHRSPSGMRQGRTSERSH-------------- 762

Query: 158 RYSAPKTPSLNGDQLPDALKHY*HCSPA 75
           R S  +T     +  P       HCSP+
Sbjct: 763 RSSCERTRHSPSEMRPGRPSGRNHCSPS 790



EST assemble image


clone accession position
1 HCL016c10_r AV640439 1 453
2 MXL006f01_r BP093312 29 441
3 LCL060c07_r AV629527 103 582




Chlamydomonas reinhardtii
Kazusa DNA Research Institute