KCC002306A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002306A_C01 KCC002306A_c01
cCACTGCTAGCTCTACAGTCGGGCCTATACACCGAAGCTGCGGTTCCGCTCGAAAGAATT
GCAAAATGCGCTCAGTGGCCGCCAACGTCCCGCAGAGCGCACCCCTGTCGGTGCGCGAGC
GGATTCTCTCATCCTTTCACTGCTCACCCAGCACTTCTGGTCGCGCATGCTGCCCTGCTC
ACGGCTTGCCGGCGGCTCGCCGGCAGTCCACAACATGCGCAGCCTCAAAGGCAGCCAAGA
GCGGCAAGTCGGGTGGCGGCCAGGGCTTCAAGGGCTTCGGCGAGGCTCCCAAGCCCGCTC
CGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002306A_C01 KCC002306A_c01
         (305 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_641574.1| conserved hypothetical protein [Xanthomonas axo...    38  0.034
dbj|BAC04036.1| unnamed protein product [Homo sapiens]                 36  0.17
ref|XP_325464.1| predicted protein [Neurospora crassa] gi|289220...    34  0.64
dbj|BAB19336.1| hypothetical protein [Oryza sativa (japonica cul...    34  0.64
ref|ZP_00018418.1| hypothetical protein [Chloroflexus aurantiacus]     34  0.64

>ref|NP_641574.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306] gi|21107388|gb|AAM36110.1| conserved
           hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 442

 Score = 38.1 bits (87), Expect = 0.034
 Identities = 29/74 (39%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 58  IAKCAQWPPTSRRAHPCRCASGFSHPFTAH-----PALLVAHAALLTACRRLAGSPQHAQ 222
           +A  A  PPT R   P  C  G SHP   +     P LL+A  AL  AC   A SP   +
Sbjct: 2   VATGAACPPTHRSTEPPDCDIGVSHPACENLAMIKPLLLLALTALCAACAHPAPSP---K 58

Query: 223 PQRQPRAASRVAAR 264
            Q    AA   AAR
Sbjct: 59  MQTDTLAARPAAAR 72

>dbj|BAC04036.1| unnamed protein product [Homo sapiens]
          Length = 279

 Score = 35.8 bits (81), Expect = 0.17
 Identities = 26/62 (41%), Positives = 29/62 (45%), Gaps = 8/62 (12%)
 Frame = -3

Query: 291 WEPRRSP*S------PGRHPTCRSWLPLRLRMLWTAGEPPASREQGSMRDQKC--WVSSE 136
           W P RS  S      PGR PTC  W PLR+RM W AG  P      +     C  W SS 
Sbjct: 52  WRPPRSSPSLCALRGPGRAPTC--W-PLRVRMPWRAGSRPCRVPASTTCGWWCASWSSSW 108

Query: 135 RM 130
           R+
Sbjct: 109 RL 110

>ref|XP_325464.1| predicted protein [Neurospora crassa] gi|28922064|gb|EAA31335.1|
           predicted protein [Neurospora crassa]
          Length = 355

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +3

Query: 120 RILSSFHCSPSTSGRACCPAHGLPAARRQST---TCAASKAAKSGKSGGGQGFKGFG 281
           ++L    C P+  G  CCP HG   A    T   TCA          GGG G  G G
Sbjct: 101 KVLCGHGCMPA--GAVCCPDHGYCDAGEVCTDHGTCAVGSGGGGSGGGGGSGGGGGG 155

>dbj|BAB19336.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 167

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 28/84 (33%), Positives = 33/84 (38%)
 Frame = +1

Query: 46  PLERIAKCAQWPPTSRRAHPCRCASGFSHPFTAHPALLVAHAALLTACRRLAGSPQHAQP 225
           PL R A     PPT RR H   C           P    A AA  TA            P
Sbjct: 64  PLRRHADIGNPPPTHRRPHHRACL----------PPCTAAQAAFATA----------PPP 103

Query: 226 QRQPRAASRVAARASRASARLPSP 297
            + P AA+  ++RAS AS R  +P
Sbjct: 104 HKPPDAAAVASSRASSASHRPTTP 127

>ref|ZP_00018418.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 1163

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 273  P*SPGRHP-TCRSWLPLRLRMLWTAGEPPASREQGSMRDQKCWVSSERMRESARAPTG 103
            P +PGR+  T RS L +  R LW AG   A+ E   + D+  +   E  R     PTG
Sbjct: 935  PLAPGRYEVTVRSGLSVSRRQLWVAGSGIATAEPMLVTDRTAYTVGETARLLISGPTG 992



EST assemble image


clone accession position
1 HCL059g12_r AV642881 1 305
2 HCL089b03_r AV644469 2 104
3 HCL015h02_r AV640414 3 211




Chlamydomonas reinhardtii
Kazusa DNA Research Institute