KCC002300A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002300A_C01 KCC002300A_c01
cagtgatggaccagaAGTACCCTAATTCTGTTTGTATCCTCGACACAGGCGCCAGAGTCT
AGTTCACTAGTGGTTTTCTTTGTGCCAAGATATAAGTTTTTAGTTATGAGCTGCCGAACT
TGTCACGTTAGCGGCACAGTCTCTGCATAGGCGCCTTCAGCGGCCAGAAAAGGCGCCATC
TGTGGCGTCGACTCAAAAATGCTTGGCGTGTCTTCAAATTACCCGCCTCCTCCACTGGAT
GAGGATGGCTTGTACCAGCAGGCATCGGGAGAAGGCAGCGCTAGCGAAAACTTCAAGGTG
GTCGTGCGCATTCGACCGCCATTGCGGCGCGAATTACAGGGAACTGGCCTGCGTGCATAT
CAATGCACTACAGCCGTGGAGCCGGGAGACCGCAACATCATCCTATCAGAGAACCTGCCG
GCCGTCATCAGCCAGCATGGCGGTATCACGGACCTTTACAACACGTACAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002300A_C01 KCC002300A_c01
         (470 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK71687.1| hemagglutinin [Influenza A virus (A/Turkey/MO/240...    34  0.98
sp|P20959|IBP3_BOVIN Insulin-like growth factor binding protein ...    33  1.7
ref|NP_776981.1| insulin-like growth factor binding protein 3 [B...    33  1.7
ref|XP_233345.2| similar to developmental control protein [Rattu...    32  2.8
gb|AAB03291.1| hemagglutinin gi|1399605|gb|AAB03292.1| hemagglut...    32  2.8

>gb|AAK71687.1| hemagglutinin [Influenza A virus (A/Turkey/MO/24093/99(H1N2))]
          Length = 566

 Score = 33.9 bits (76), Expect = 0.98
 Identities = 22/64 (34%), Positives = 29/64 (44%), Gaps = 5/64 (7%)
 Frame = +1

Query: 217 NYPPPPLDEDGLYQQAS-----GEGSASENFKVVVRIRPPLRRELQGTGLRAYQCTTAVE 381
           ++PP   D+  LYQ A      G    S+ FK  +  RP +R    G   R     T VE
Sbjct: 197 HHPPTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVR----GQAGRMNYYWTLVE 252

Query: 382 PGDR 393
           PGD+
Sbjct: 253 PGDK 256

>sp|P20959|IBP3_BOVIN Insulin-like growth factor binding protein 3 precursor (IGFBP-3)
           (IBP-3) (IGF-binding protein 3) gi|108760|pir||JN0064
           insulin-like growth factor-binding protein 3 precursor -
           bovine gi|163190|gb|AAA30582.1| insulin-like growth
           factor binding protein-3
          Length = 291

 Score = 33.1 bits (74), Expect = 1.7
 Identities = 22/63 (34%), Positives = 27/63 (41%)
 Frame = +1

Query: 160 AARKGAICGVDSKMLGVSSNYPPPPLDEDGLYQQASGEGSASENFKVVVRIRPPLRRELQ 339
           A R+G  CGV ++  G      PPP D   L     G G  + N   V R+RP L     
Sbjct: 76  ALREGQPCGVYTERCGSGLRCQPPPGDPRPLQALLDGRGLCA-NASAVGRLRPYLLPSAS 134

Query: 340 GTG 348
           G G
Sbjct: 135 GNG 137

>ref|NP_776981.1| insulin-like growth factor binding protein 3 [Bos taurus]
           gi|11095301|gb|AAG29824.1|AF305199_1 insulin-like growth
           factor binding protein-3 [Bos taurus]
           gi|11095303|gb|AAG29825.1| insulin-like growth factor
           binding protein-3 [Bos taurus]
          Length = 291

 Score = 33.1 bits (74), Expect = 1.7
 Identities = 22/63 (34%), Positives = 27/63 (41%)
 Frame = +1

Query: 160 AARKGAICGVDSKMLGVSSNYPPPPLDEDGLYQQASGEGSASENFKVVVRIRPPLRRELQ 339
           A R+G  CGV ++  G      PPP D   L     G G  + N   V R+RP L     
Sbjct: 76  ALREGQPCGVYTERCGSGLRCQPPPGDPRPLQALLDGRGLCA-NASAVGRLRPYLLPSAS 134

Query: 340 GTG 348
           G G
Sbjct: 135 GNG 137

>ref|XP_233345.2| similar to developmental control protein [Rattus norvegicus]
          Length = 840

 Score = 32.3 bits (72), Expect = 2.8
 Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
 Frame = +3

Query: 342 NWPACISMHYS--RGAGRPQHHPIREPAGRHQPAWRYHGPLQH 464
           N+P     HYS   G G    HP++ PA    P+W  HGP+ H
Sbjct: 672 NFPPSPPAHYSPMHGMGLLPMHPLQIPA----PSWPIHGPMLH 710

>gb|AAB03291.1| hemagglutinin gi|1399605|gb|AAB03292.1| hemagglutinin
          Length = 566

 Score = 32.3 bits (72), Expect = 2.8
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +1

Query: 217 NYPPPPLDEDGLYQQAS-----GEGSASENFKVVVRIRPPLRRELQGTGLRAYQCTTAVE 381
           ++PP   D+  LYQ A      G    ++ FK  +  RP +R    G   R     T VE
Sbjct: 197 HHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVR----GQAGRMNYYWTLVE 252

Query: 382 PGD 390
           PGD
Sbjct: 253 PGD 255



EST assemble image


clone accession position
1 LCL046h08_r AV628777 1 470
2 HCL015c02_r AV640380 16 258




Chlamydomonas reinhardtii
Kazusa DNA Research Institute