KCC002299A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002299A_C01 KCC002299A_c01
cgtaaaaCAAGGCTACTTGACGCGTTCTGTGGAAGGACAGTTAGGGGTTCGCGGAGCTCA
CATGACTCTCGCTGCGCGGGCCAAAGGCCCCGCAGCCCTTTCCGCTAGTTTGGTAGCGTT
GTTGTACACTGTTAATGTCAATTGAAGCCAAGACTTAGGTCACCGTGATTCGTGGAATCT
TTACCGCACTGCACGGGAGCTGCTAACGCGGATAGACTTCGTTGCTGTCCGGAAGCTTAG
GAGAGGGAGACGCTCCTAACCGGGCCCAGGTCTTTTGGCTTCGTAGCCGCGGGGCTTTGC
TGCCGGGCGTCCGTGGCGCACAGGCGCGCAGTCCTGCGTCCACCTCGCTAGCTGGGCTGA
CAGCTGCCACGCCGGCGCAGCCGGGAACCAGCAGCCAGCTTTTCCGCTTGCTACCCCTCT
CCAGCTACCCAGCTACCAACCCAGCAGCCTAGCCTAGCCTAGCCCAGCCTAGCCACAATG
CCGCCACTTCCGACGTTGTGGGACCCGGCGGGTGCGGTGGACAAGCTGCCGCAGCCGTTC
CGCATGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002299A_C01 KCC002299A_c01
         (548 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD31833.1| AnsB kinase [Streptomyces collinus]                     40  0.016
ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas p...    37  0.18
ref|NP_215674.1| hypothetical protein Rv1158c [Mycobacterium tub...    37  0.23
gb|AAO37992.1| putative protease inhibitor [Oryza sativa (japoni...    37  0.23
pir||G71022 hypothetical protein PH1476 - Pyrococcus horikoshii ...    37  0.23

>gb|AAD31833.1| AnsB kinase [Streptomyces collinus]
          Length = 296

 Score = 40.4 bits (93), Expect = 0.016
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
 Frame = +3

Query: 234 SLGEGDAPNRAQVFWLRSRGALLP-------GVRGAQARSPASTSLAGLTAATPAQPGTS 392
           ++G G A +R Q  W+R  G +          + G     PA+   AG+  A P +PG +
Sbjct: 36  TVGPGPARHRRQRTWIRWLGKVREPCGGAPTALAGVSVAMPATLGAAGVVTAWPDRPGGT 95

Query: 393 SQLFRLLPLSSY------PATNPAA*PSLAQPSHNAATSDVVGPG-GCGGQAAAAVP 542
                  P   +      PA   A  P+LA+ +H A   D + PG G GG     VP
Sbjct: 96  GTDLGSAPRGIFPTIRVAPAPTTATSPALAE-AHTAGRPDPLYPGSGGGGLVVGRVP 151

>ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas putida KT2440]
           gi|24981549|gb|AAN65827.1|AE016211_5 alginate regulatory
           protein AlgP [Pseudomonas putida KT2440]
          Length = 329

 Score = 37.0 bits (84), Expect = 0.18
 Identities = 25/86 (29%), Positives = 39/86 (45%)
 Frame = +3

Query: 285 SRGALLPGVRGAQARSPASTSLAGLTAATPAQPGTSSQLFRLLPLSSYPATNPAA*PSLA 464
           ++ A  P  + A A  PA+   A   AA PA    +++        +  A  PAA P+ A
Sbjct: 243 AKPAAKPAAKAAAAAKPAAKPAAKAPAAKPAAKPAATKA------PARTAAKPAAKPAEA 296

Query: 465 QPSHNAATSDVVGPGGCGGQAAAAVP 542
           +P+  AAT++ V P      A  + P
Sbjct: 297 KPATPAATTNSVSPAAAAPSAPVSTP 322

>ref|NP_215674.1| hypothetical protein Rv1158c [Mycobacterium tuberculosis H37Rv]
           gi|31792351|ref|NP_854844.1| CONSERVED HYPOTHETICAL
           ALA-, PRO-RICH PROTEIN [Mycobacterium bovis subsp. bovis
           AF2122/97] gi|7476662|pir||G70555 hypothetical protein
           Rv1158c - Mycobacterium tuberculosis  (strain H37RV)
           gi|2117196|emb|CAB09017.1| hypothetical protein Rv1158c
           [Mycobacterium tuberculosis H37Rv]
           gi|31617939|emb|CAD94050.1| CONSERVED HYPOTHETICAL ALA-,
           PRO-RICH PROTEIN [Mycobacterium bovis subsp. bovis
           AF2122/97]
          Length = 227

 Score = 36.6 bits (83), Expect = 0.23
 Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
 Frame = +3

Query: 330 SPASTSLAGLTAATPAQPGTSSQLFRLLPLS-SYPATNPAA*PSLAQPSHNAATSDVVGP 506
           +PA+ + A   A TP+ PG ++ +  + P + + P T PAA P++  P  NA    +  P
Sbjct: 92  TPAAPAAAAAPALTPSIPGVNAPIPGITPAAPALPVTAPAAAPTI--PGVNAPIPGITAP 149

Query: 507 GGCGGQAAAAVP 542
                   A+VP
Sbjct: 150 APAAAAVPASVP 161

>gb|AAO37992.1| putative protease inhibitor [Oryza sativa (japonica
           cultivar-group)]
          Length = 200

 Score = 36.6 bits (83), Expect = 0.23
 Identities = 27/83 (32%), Positives = 36/83 (42%)
 Frame = +3

Query: 285 SRGALLPGVRGAQARSPASTSLAGLTAATPAQPGTSSQLFRLLPLSSYPATNPAA*PSLA 464
           +R ALLPG    QA   +  + AG+  ++PA P TS         +    T PA   S  
Sbjct: 105 ARAALLPGACSVQAPPASQCNAAGVPVSSPANPTTSGGTPATPAGTPGSKTTPA---STT 161

Query: 465 QPSHNAATSDVVGPGGCGGQAAA 533
           Q S  +     VG G  GG+  A
Sbjct: 162 QYSDGSVNRSRVGEGAPGGRVEA 184

>pir||G71022 hypothetical protein PH1476 - Pyrococcus horikoshii
           gi|3257900|dbj|BAA30583.1| 204aa long hypothetical
           protein [Pyrococcus horikoshii]
          Length = 204

 Score = 36.6 bits (83), Expect = 0.23
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 311 PWRTGAQSCVHLASWADSCHAGAAGNQQPAFPLATPLQL 427
           PWR G  + +  A W + C A  AG ++PA  +ATPL +
Sbjct: 9   PWRAGLSNSISRA-WLNKCSAPLAGLEEPAMLMATPLDI 46



EST assemble image


clone accession position
1 LCL033h02_r AV627917 1 548
2 HCL080e09_r AV644030 8 466
3 LCL062b08_r AV629620 13 461
4 HCL015a09_r AV640370 19 238




Chlamydomonas reinhardtii
Kazusa DNA Research Institute