KCC002293A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002293A_C01 KCC002293A_c01
tgaaaccgtaaactgttcaatcaaattcgatgagctagcccacattgagctgacatttct
gcgtcagaatgttcgaggcaATTCAACGACCTGTGCTCGAATTAGCCGAAAACTTGCAGG
GCGCGCTGCTGTACCTTGACGCGGGTGCTGGGGAGATCGCTCAGACCACGCTCGGGCTTC
CATTCCTTTTTGGACTAGGTGTATCTAATGTCTGCTCGCTGGAGCTGGCTAGCGCCGATG
ACGCGGCGCTGCCTACTCTGGCTGCGGGGCAGCCCCCCTCCCGCCTCGCTGTGTTCACCA
CACAGCTTTTGACCGACGCACACCCCTCCATCTTGCGCGCGGTGCTGGTGCATCCCACCG
TCACGTCCGTGGTCGTTTACTGCTCGGTGTCGGAGCACGCACACGCTTGCCAGGCCGCCA
CCGATTTGGGAGTGGAGGCTTACCGGGAGTACTCGGACCTCATGCACCGGGAGGTATTCA
GGCTCAGGCAACAGCAGCTGCAGCAGCAACAGCAACAACAGCAACAGCAAAGCGCATGCG
GCGCGGCGGGAGCCAGCGCGGGTGGCGCAAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002293A_C01 KCC002293A_c01
         (571 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_181798.1| expressed protein [Arabidopsis thaliana] gi|253...    56  3e-07
gb|AAB05810.1| super cysteine rich protein; SCRP [Homo sapiens]        52  7e-06
gb|AAB91452.1| CTG26 alternate open reading frame [Homo sapiens]       50  3e-05
ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177...    47  2e-04
ref|NP_730714.2| Cysteine string protein CG6395-PC [Drosophila m...    46  4e-04

>ref|NP_181798.1| expressed protein [Arabidopsis thaliana] gi|25370821|pir||B84857
           hypothetical protein At2g42700 [imported] - Arabidopsis
           thaliana gi|4512682|gb|AAD21736.1| unknown protein
           [Arabidopsis thaliana] gi|20198081|gb|AAM15390.1|
           unknown protein [Arabidopsis thaliana]
          Length = 788

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 36/124 (29%), Positives = 55/124 (44%)
 Frame = +3

Query: 93  VLELAENLQGALLYLDAGAGEIAQTTLGLPFLFGLGVSNVCSLELASADDAALPTLAAGQ 272
           + E+ E+++ A++Y+DAG  E  Q     P    LG   VCSLE  ++ DA     +   
Sbjct: 14  IREIEEDVKDAIVYIDAGCTESFQFVGAFPLFLELGARAVCSLENMTSLDAVADWNSKSD 73

Query: 273 PPSRLAVFTTQLLTDAHPSILRAVLVHPTVTSVVVYCSVSEHAHACQAATDLGVEAYREY 452
              R+ + T++LL DAH  +LR +  H                         G +AYREY
Sbjct: 74  CAKRIVIMTSRLLNDAHRYMLRCLSTHE------------------------GPDAYREY 109

Query: 453 SDLM 464
             L+
Sbjct: 110 ETLL 113

>gb|AAB05810.1| super cysteine rich protein; SCRP [Homo sapiens]
          Length = 46

 Score = 51.6 bits (122), Expect = 7e-06
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = -1

Query: 556 LAPAAPHALCCCCCCCCCCSCCC 488
           L P      CCCCCCCCCC CCC
Sbjct: 4   LCPDRSRCCCCCCCCCCCCCCCC 26

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -1

Query: 529 CCCCCCCCCCSCCCL 485
           CCCCCCCCCC CCCL
Sbjct: 24  CCCCCCCCCCFCCCL 38

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 15/29 (51%), Positives = 18/29 (61%)
 Frame = -1

Query: 529 CCCCCCCCCCSCCCLSLNTSRCMRSEYSR 443
           CCCCCCCCCC CCC       C   ++S+
Sbjct: 14  CCCCCCCCCCCCCCCCCCCCFCCCLKHSK 42

>gb|AAB91452.1| CTG26 alternate open reading frame [Homo sapiens]
          Length = 124

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -1

Query: 529 CCCCCCCCCCSCCCLSLNTSR 467
           CCCCCCCCCC CCC  L   R
Sbjct: 104 CCCCCCCCCCCCCCWLLPRRR 124

 Score = 49.3 bits (116), Expect = 4e-05
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -1

Query: 529 CCCCCCCCCCSCCC 488
           CCCCCCCCCC CCC
Sbjct: 103 CCCCCCCCCCCCCC 116

 Score = 49.3 bits (116), Expect = 4e-05
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -1

Query: 529 CCCCCCCCCCSCCC 488
           CCCCCCCCCC CCC
Sbjct: 102 CCCCCCCCCCCCCC 115

>ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177813|gb|EAA06779.2|
           ENSANGP00000001657 [Anopheles gambiae str. PEST]
          Length = 283

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 37/145 (25%), Positives = 55/145 (37%)
 Frame = -1

Query: 529 CCCCCCCCCCSCCCLSLNTSRCMRSEYSR*ASTPKSVAAWQACACSDTEQ*TTTDVTVGC 350
           C   C CC  SC   + + S C  S  +   S   S ++  A +CS     + +     C
Sbjct: 142 CTTSCSCCTSSCSSCASSCSSCASSSSTTSCSCCASSSSSCASSCSSCAS-SCSSCASSC 200

Query: 349 TSTARKMEGCASVKSCVVNTARREGGCPAARVGSAASSALASSSEQTLDTPSPKRNGSPS 170
           +S       CAS  SC  +T+    G  +   G+ +SS   SS   +  +       S S
Sbjct: 201 SSGTTSSSSCAS--SCSSSTSSSSSGTTSCSSGTTSSSCCTSSCSSSTSSSCSGTTASSS 258

Query: 169 VV*AISPAPASRYSSAPCKFSANSS 95
              + S   +S  SS     S  SS
Sbjct: 259 CASSCSSCASSCSSSTSSSSSCASS 283

 Score = 37.0 bits (84), Expect = 0.19
 Identities = 43/169 (25%), Positives = 63/169 (36%), Gaps = 16/169 (9%)
 Frame = -1

Query: 511 CCCCSCCCLSLNTSRCMRSEYSR*ASTPKSVAAWQACA-----CSDTEQ*TTTDVTVGCT 347
           CC  SC   S  TS C  S  S  + T    +   +C+     CS     + +  T  CT
Sbjct: 15  CCTTSC---SSGTSSCSSSTSSGSSGTTSCSSCTSSCSSGTSSCSSATS-SCSSGTTSCT 70

Query: 346 STARKMEGCASVKSCVVNTARREG-------GCPAARVGSAASSALASSSEQTLDT---- 200
           S+      C S  SC   T+ R         G  +   G+ +SS+ ASS   +  +    
Sbjct: 71  SSTSSSNSCTS--SCSSGTSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSSG 128

Query: 199 PSPKRNGSPSVV*AISPAPASRYSSAPCKFSANSSTGR*IASNILTQKC 53
            S  R+G+ S     +       S + C  S +S      AS+  T  C
Sbjct: 129 TSSCRSGTSSCSSCTTSCSCCTSSCSSCASSCSS-----CASSSSTTSC 172

 Score = 37.0 bits (84), Expect = 0.19
 Identities = 31/115 (26%), Positives = 49/115 (41%), Gaps = 5/115 (4%)
 Frame = -1

Query: 547 AAPHALCCCCCCCCCCSCCCLSLNT--SRCMRSEYSR*ASTPKSVAAWQACACSDTEQ*T 374
           A+  +   C CC    S C  S ++  S C     S  + T  S +   +C+ S +   +
Sbjct: 164 ASSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSSCASSCSSSTSSSSS 223

Query: 373 -TTDVTVGCTSTARKMEGCAS--VKSCVVNTARREGGCPAARVGSAASSALASSS 218
            TT  + G TS++     C+S    SC   TA        +   S+ SS+ +SSS
Sbjct: 224 GTTSCSSGTTSSSCCTSSCSSSTSSSCSGTTASSSCASSCSSCASSCSSSTSSSS 278

 Score = 35.4 bits (80), Expect = 0.55
 Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 10/161 (6%)
 Frame = -1

Query: 505 CCSCCCLSLNTSRCMRSEYSR*ASTPKSVAAWQACAC---------SDTEQ*TTTDVTVG 353
           C S C  S  TS C     S  + T    +   +C+C         S      ++  T  
Sbjct: 114 CASSCSSS--TSSCSSGTSSCRSGTSSCSSCTTSCSCCTSSCSSCASSCSSCASSSSTTS 171

Query: 352 CTSTARKMEGCA-SVKSCVVNTARREGGCPAARVGSAASSALASSSEQTLDTPSPKRNGS 176
           C+  A     CA S  SC  + +     C +   G+ +SS+ ASS   +  + S   +G+
Sbjct: 172 CSCCASSSSSCASSCSSCASSCSSCASSCSS---GTTSSSSCASSCSSSTSSSS---SGT 225

Query: 175 PSVV*AISPAPASRYSSAPCKFSANSSTGR*IASNILTQKC 53
            S     S   +S   ++ C  S +SS     AS+     C
Sbjct: 226 TS---CSSGTTSSSCCTSSCSSSTSSSCSGTTASSSCASSC 263

 Score = 33.9 bits (76), Expect = 1.6
 Identities = 39/157 (24%), Positives = 60/157 (37%), Gaps = 11/157 (7%)
 Frame = -1

Query: 529 CCCCCCCCCCSCCCLSLNTSRCMRSEYSR*ASTPKSVAAWQACACSDTEQ*TT----TDV 362
           C      C  S    +  TS C     SR +ST  S +   +C+   T   +     +  
Sbjct: 62  CSSGTTSCTSSTSSSNSCTSSCSSGTSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSS 121

Query: 361 TVGCTS-TARKMEGCASVKSCVVNTARREGGCP--AARVGSAASSALASSSEQTLDTPSP 191
           T  C+S T+    G +S  SC  + +     C   A+   S ASS+  +S      + S 
Sbjct: 122 TSSCSSGTSSCRSGTSSCSSCTTSCSCCTSSCSSCASSCSSCASSSSTTSCSCCASSSSS 181

Query: 190 KRNGSPSVV*AISPAPAS----RYSSAPCKFSANSST 92
             +   S   + S   +S      SS+ C  S +SST
Sbjct: 182 CASSCSSCASSCSSCASSCSSGTTSSSSCASSCSSST 218

 Score = 33.5 bits (75), Expect = 2.1
 Identities = 33/141 (23%), Positives = 55/141 (38%)
 Frame = -1

Query: 517 CCCCCCSCCCLSLNTSRCMRSEYSR*ASTPKSVAAWQACACSDTEQ*TTTDVTVGCTSTA 338
           C  C  SC C + + S C  S      S+  S ++  +C+C  +   +++     C+S A
Sbjct: 139 CSSCTTSCSCCTSSCSSCASS-----CSSCASSSSTTSCSCCAS---SSSSCASSCSSCA 190

Query: 337 RKMEGCASVKSCVVNTARREGGCPAARVGSAASSALASSSEQTLDTPSPKRNGSPSVV*A 158
                CAS  SC         G  ++   +++ S+  SSS     + S     S     +
Sbjct: 191 SSCSSCAS--SC-------SSGTTSSSSCASSCSSSTSSSSSGTTSCSSGTTSSSCCTSS 241

Query: 157 ISPAPASRYSSAPCKFSANSS 95
            S + +S  S      S  SS
Sbjct: 242 CSSSTSSSCSGTTASSSCASS 262

>ref|NP_730714.2| Cysteine string protein CG6395-PC [Drosophila melanogaster]
           gi|3047004|gb|AAD09430.1| cysteine string protein 2
           [Drosophila melanogaster] gi|28380625|gb|AAN12195.2|
           CG6395-PC [Drosophila melanogaster]
          Length = 228

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -1

Query: 529 CCCCCCCCCCSCCC 488
           CCCCCCCCCC+ CC
Sbjct: 122 CCCCCCCCCCNFCC 135

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 12/28 (42%), Positives = 14/28 (49%), Gaps = 2/28 (7%)
 Frame = -1

Query: 553 APAAPHALCCCCCC--CCCCSCCCLSLN 476
           +PA    + CC     CCCC CCC   N
Sbjct: 105 SPAVKAVVICCAVITGCCCCCCCCCCCN 132



EST assemble image


clone accession position
1 HCL021b09_r AV640712 1 513
2 HCL014b02_r AV640315 192 571




Chlamydomonas reinhardtii
Kazusa DNA Research Institute