Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002291A_C01 KCC002291A_c01
(539 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB68567.1| archaeal-type opsin 2 [Chlamydomonas reinhardtii... 343 6e-94
gb|AAM46858.1|AF503364_1 channelopsin 1 [synthetic construct] 213 2e-54
gb|AAM44039.1|AF508965_1 sensory opsin A [Chlamydomonas reinhard... 213 2e-54
gb|AAL08946.1| chlamyopsin 3 precursor [Chlamydomonas reinhardti... 213 2e-54
sp|P33972|BACR_HALHS Bacteriorhodopsin (BR) gi|477726|pir||B4768... 41 0.009
>dbj|BAB68567.1| archaeal-type opsin 2 [Chlamydomonas reinhardtii]
gi|20219020|gb|AAM15777.1|AF461397_1 retinal binding
protein [Chlamydomonas reinhardtii]
gi|21218340|gb|AAM44040.1|AF508966_1 sensory opsin B
[Chlamydomonas reinhardtii] gi|21218344|gb|AAM44042.1|
sensory opsin B [Chlamydomonas reinhardtii]
Length = 737
Score = 343 bits (881), Expect = 6e-94
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 43 MDYGGALSAVGRELLFVTNPVVVNGSVLVPEDQCYCAGWIESRGTNGAQTASNVLQWLAA 222
MDYGGALSAVGRELLFVTNPVVVNGSVLVPEDQCYCAGWIESRGTNGAQTASNVLQWLAA
Sbjct: 1 MDYGGALSAVGRELLFVTNPVVVNGSVLVPEDQCYCAGWIESRGTNGAQTASNVLQWLAA 60
Query: 223 GFSILLLMFYAYQTWKSTCGWEEIYVCAIEMVKVILEFFFEFKNPSMLYLATGHRVQWLR 402
GFSILLLMFYAYQTWKSTCGWEEIYVCAIEMVKVILEFFFEFKNPSMLYLATGHRVQWLR
Sbjct: 61 GFSILLLMFYAYQTWKSTCGWEEIYVCAIEMVKVILEFFFEFKNPSMLYLATGHRVQWLR 120
Query: 403 YAEWLLTCPVILIHLSNLTGLSNDYSRRTMGLLVSDIGTIVWGAT 537
YAEWLLTCPVILIHLSNLTGLSNDYSRRTMGLLVSDIGTIVWGAT
Sbjct: 121 YAEWLLTCPVILIHLSNLTGLSNDYSRRTMGLLVSDIGTIVWGAT 165
>gb|AAM46858.1|AF503364_1 channelopsin 1 [synthetic construct]
Length = 317
Score = 213 bits (541), Expect = 2e-54
Identities = 95/144 (65%), Positives = 117/144 (80%), Gaps = 2/144 (1%)
Frame = +1
Query: 112 NGSVL-VPED-QCYCAGWIESRGTNGAQTASNVLQWLAAGFSILLLMFYAYQTWKSTCGW 285
NGSV+ +P + QC+C W++S GTN + A+N+LQW+ S L LMFY YQTWKSTCGW
Sbjct: 61 NGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSALCLMFYGYQTWKSTCGW 120
Query: 286 EEIYVCAIEMVKVILEFFFEFKNPSMLYLATGHRVQWLRYAEWLLTCPVILIHLSNLTGL 465
EEIYV IEM+K I+E+F EF P+++Y + G++ WLRYAEWLLTCPVILIHLSNLTGL
Sbjct: 121 EEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGL 180
Query: 466 SNDYSRRTMGLLVSDIGTIVWGAT 537
+NDY++RTMGLLVSDIGTIVWG T
Sbjct: 181 ANDYNKRTMGLLVSDIGTIVWGTT 204
>gb|AAM44039.1|AF508965_1 sensory opsin A [Chlamydomonas reinhardtii]
gi|21218342|gb|AAM44041.1| sensory opsin A
[Chlamydomonas reinhardtii]
Length = 712
Score = 213 bits (541), Expect = 2e-54
Identities = 95/144 (65%), Positives = 117/144 (80%), Gaps = 2/144 (1%)
Frame = +1
Query: 112 NGSVL-VPED-QCYCAGWIESRGTNGAQTASNVLQWLAAGFSILLLMFYAYQTWKSTCGW 285
NGSV+ +P + QC+C W++S GTN + A+N+LQW+ S L LMFY YQTWKSTCGW
Sbjct: 61 NGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSALCLMFYGYQTWKSTCGW 120
Query: 286 EEIYVCAIEMVKVILEFFFEFKNPSMLYLATGHRVQWLRYAEWLLTCPVILIHLSNLTGL 465
EEIYV IEM+K I+E+F EF P+++Y + G++ WLRYAEWLLTCPVILIHLSNLTGL
Sbjct: 121 EEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGL 180
Query: 466 SNDYSRRTMGLLVSDIGTIVWGAT 537
+NDY++RTMGLLVSDIGTIVWG T
Sbjct: 181 ANDYNKRTMGLLVSDIGTIVWGTT 204
>gb|AAL08946.1| chlamyopsin 3 precursor [Chlamydomonas reinhardtii]
gi|15823746|dbj|BAB68566.1| archaeal-type opsin 1
[Chlamydomonas reinhardtii]
Length = 712
Score = 213 bits (541), Expect = 2e-54
Identities = 95/144 (65%), Positives = 117/144 (80%), Gaps = 2/144 (1%)
Frame = +1
Query: 112 NGSVL-VPED-QCYCAGWIESRGTNGAQTASNVLQWLAAGFSILLLMFYAYQTWKSTCGW 285
NGSV+ +P + QC+C W++S GTN + A+N+LQW+ S L LMFY YQTWKSTCGW
Sbjct: 61 NGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSALCLMFYGYQTWKSTCGW 120
Query: 286 EEIYVCAIEMVKVILEFFFEFKNPSMLYLATGHRVQWLRYAEWLLTCPVILIHLSNLTGL 465
EEIYV IEM+K I+E+F EF P+++Y + G++ WLRYAEWLLTCPVILIHLSNLTGL
Sbjct: 121 EEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGL 180
Query: 466 SNDYSRRTMGLLVSDIGTIVWGAT 537
+NDY++RTMGLLVSDIGTIVWG T
Sbjct: 181 ANDYNKRTMGLLVSDIGTIVWGTT 204
>sp|P33972|BACR_HALHS Bacteriorhodopsin (BR) gi|477726|pir||B47686 bacteriorhodopsin-like
retinal protein - Halobacterium salinarum (fragment)
gi|285817|dbj|BAA01801.1| bacteriorhodopsin
[Halobacterium salinarum]
Length = 209
Score = 41.2 bits (95), Expect = 0.009
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Frame = +1
Query: 211 WLAAGFSILLLMFYAYQTWKSTCGWEEIYVCAIEMVKVI-----LEFFFEFKNPSMLYLA 375
WL L ++++ + W T G + + A ++ I L F + +
Sbjct: 2 WLGTAGMFLGMLYFIARGWGETDGRRQKFYIATILITAIAFVNYLAMALGFGLTFIEFGG 61
Query: 376 TGHRVQWLRYAEWLLTCPVILIHLSNLTGLSNDYSRRTMGLLVSDIGT 519
H + W RY +WL T P++L L L G + + L V IGT
Sbjct: 62 EQHPIYWARYTDWLFTTPLLLYDLGLLAGADRNTIYSLVSLDVLMIGT 109
