KCC002290A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002290A_C01 KCC002290A_c01
gtctgtgcagcacttcaagggcatcatgtcagagccgctgtggagaacaggcactcaatc
tgcacctatcactgtgggccCCGGGGCAGTTTGCTTACGCTTGGATGAAGGAGAAGATTG
ATGGGCGCGGACGGGATAATGTTGCGGACCGGCAGCTGCGCTTCCTTCGTGACATGTACT
TTCCACCTGGCAATAACTTGCCCCCGTCGCTGTACATAATGAAGAAGATGTTGGATATTC
CAGACGCACGTGACTTAAAAAGCACGTTTGTTTGAGCGACAAGTGCTTGTTCCCTGATTT
CCCTCGAGATGAGTGGCACCAGCACCTGCAAGATGAGTGCGGCTGCGGCCATCGACGGTT
TAAGCCTGCCCGGCCAGGACACCAACCAGTTCCGAACAAGAGGTTCTACGACTTCGGTGT
CGAGAATGTCGTGCGCGGCATGTTCATGGACCCACGGTTCTGCACGTTTCGCGGCACAGG
GCGCGACAACAACCCTGACGACTTCTACGGCTCGCGGTACGCGCAAGACATCAATGCCAA
GACTTCCGGCGAGTTCTTCGAGCCCGACAGCTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002290A_C01 KCC002290A_c01
         (573 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||JC7819 metalloproteinase II precursor - Alteromonas sp. (St...    40  0.017
ref|NP_786208.1| extracellular protein [Lactobacillus plantarum ...    38  0.11
ref|XP_318620.1| ENSANGP00000020885 [Anopheles gambiae] gi|21302...    36  0.33
ref|NP_014116.1| cell wall integrity and stress response compone...    36  0.33
ref|NP_786644.1| extracellular protein, gamma-D-glutamate-meso-d...    36  0.43

>pir||JC7819 metalloproteinase II precursor - Alteromonas sp. (Strain O-7)
           gi|18143406|dbj|BAB79616.1| metalloprotease II
           [Alteromonas sp. O-7]
          Length = 609

 Score = 40.4 bits (93), Expect = 0.017
 Identities = 35/104 (33%), Positives = 48/104 (45%), Gaps = 1/104 (0%)
 Frame = +3

Query: 210 LYIMKKMLDIPDARDLKSTFV*ATSACSLISLEMSGTSTCKMSAAAAIDGLSLPGQ-DTN 386
           LY+        D  D KST   +   C+ IS   +GT    + A  AI G+SL GQ DT+
Sbjct: 448 LYVRYGSKPTLDTHDCKSTNSSSNEQCN-ISAVQTGTYYVMVEAWNAISGVSLVGQYDTS 506

Query: 387 QFRTRGSTTSVSRMSCAACSWTHGSARFAAQGATTTLTTSTARG 518
              T    T ++ +S A+  W + S    A   T T+TTS   G
Sbjct: 507 SGNTPIDET-INNISVASGQWQYFSQALTAGYQTLTITTSGGTG 549

>ref|NP_786208.1| extracellular protein [Lactobacillus plantarum WCFS1]
           gi|28272155|emb|CAD65059.1| extracellular protein
           [Lactobacillus plantarum WCFS1]
          Length = 314

 Score = 37.7 bits (86), Expect = 0.11
 Identities = 28/99 (28%), Positives = 45/99 (45%)
 Frame = +3

Query: 276 ATSACSLISLEMSGTSTCKMSAAAAIDGLSLPGQDTNQFRTRGSTTSVSRMSCAACSWTH 455
           +TSA S      S  S    SAA++    +     T+Q  T  S+T+ S       + T 
Sbjct: 146 STSAASSSVTSTSTASAASSSAASSSTSSATSSSATSQASTASSSTATSASMTKLSNTTA 205

Query: 456 GSARFAAQGATTTLTTSTARGTRKTSMPRLPASSSSPTA 572
            SA   +  A+++ TTS++  T  +S     ++SSS  A
Sbjct: 206 SSAASTSTAASSSATTSSSTTTSTSSSSSTTSTSSSAEA 244

 Score = 32.3 bits (72), Expect = 4.7
 Identities = 26/102 (25%), Positives = 43/102 (41%), Gaps = 3/102 (2%)
 Frame = +3

Query: 276 ATSACSLISLEMSGTSTCKMSAAAAIDGLSLPGQDTNQFRTRGST---TSVSRMSCAACS 446
           A+SA    S   S  ST   S+  ++   S     +    +   T   T+ +  S AA S
Sbjct: 111 ASSASVSSSTSTSAASTATSSSTTSVASSSAASSSSTSAASSSVTSTSTASAASSSAASS 170

Query: 447 WTHGSARFAAQGATTTLTTSTARGTRKTSMPRLPASSSSPTA 572
            T  +   +A    +T ++STA     T +    ASS++ T+
Sbjct: 171 STSSATSSSATSQASTASSSTATSASMTKLSNTTASSAASTS 212

>ref|XP_318620.1| ENSANGP00000020885 [Anopheles gambiae] gi|21302266|gb|EAA14411.1|
           ENSANGP00000020885 [Anopheles gambiae str. PEST]
          Length = 388

 Score = 36.2 bits (82), Expect = 0.33
 Identities = 28/104 (26%), Positives = 46/104 (43%), Gaps = 1/104 (0%)
 Frame = +3

Query: 261 STFV*ATSACSLISLEMSGTSTCKMSAAAAIDGLSLPGQDTNQFRTRGSTTSVSRMSCAA 440
           S+   +T+A ++ S   S ++    +++      S   + T    T   TTS    S  A
Sbjct: 263 SSITESTTAVTMTSDSSSSSTESTTASSTTPATTSSTTESTTVSSTTSETTSSRTESTTA 322

Query: 441 CSWTHGSARFAAQGATTTLTTSTARGTR-KTSMPRLPASSSSPT 569
            + T  S   + +  T + TTST+  T    ++P  P S SSPT
Sbjct: 323 ITMTSDSTSSSTESTTASSTTSTSMTTSISPTIPSSPTSLSSPT 366

>ref|NP_014116.1| cell wall integrity and stress response component 2; Wsc2p
           [Saccharomyces cerevisiae]
           gi|1730647|sp|P53832|WSC2_YEAST Cell wall integrity and
           stress response component 2 precursor
           gi|2132783|pir||S63257 probable membrane protein YNL283c
           - yeast (Saccharomyces cerevisiae)
           gi|1302357|emb|CAA96195.1| STA3 [Saccharomyces
           cerevisiae]
          Length = 503

 Score = 36.2 bits (82), Expect = 0.33
 Identities = 30/106 (28%), Positives = 50/106 (46%), Gaps = 2/106 (1%)
 Frame = +3

Query: 261 STFV*ATSACSLISLEMSGTSTCKMSAAAAIDGLSLPGQDTNQFRTRGSTTSVSRMSCAA 440
           ST   AT + S  S   + TS+ + + +++    S     T+   T  STTS S      
Sbjct: 156 STSSSATHSSSSSSTTSTTTSSSETTTSSSSSSSSSSTSTTSTTSTTSSTTSTSSSPSTT 215

Query: 441 CSWTHGSA--RFAAQGATTTLTTSTARGTRKTSMPRLPASSSSPTA 572
            S T  S+    ++  AT++ TTST+  T   ++   P+S+S  T+
Sbjct: 216 SSSTSASSSSETSSTQATSSSTTSTSSSTSTATVTSTPSSTSIGTS 261

 Score = 31.6 bits (70), Expect = 8.1
 Identities = 28/107 (26%), Positives = 48/107 (44%)
 Frame = +3

Query: 252 DLKSTFV*ATSACSLISLEMSGTSTCKMSAAAAIDGLSLPGQDTNQFRTRGSTTSVSRMS 431
           D  S+   +TS  S  S  +S  ++ K+    +    +     ++   T  +TTS S  +
Sbjct: 124 DSTSSTATSTSTTSSSSTSVSSKTSTKLDTKTSTSSSATHSSSSSS--TTSTTTSSSETT 181

Query: 432 CAACSWTHGSARFAAQGATTTLTTSTARGTRKTSMPRLPASSSSPTA 572
                 T  S+  ++   +TT TTST   T  TS    P+++SS T+
Sbjct: 182 ------TSSSSSSSSSSTSTTSTTSTTSSTTSTSSS--PSTTSSSTS 220

>ref|NP_786644.1| extracellular protein, gamma-D-glutamate-meso-diaminopimelate
           muropeptidase (putative) [Lactobacillus plantarum WCFS1]
           gi|28272593|emb|CAD65521.1| extracellular protein,
           gamma-D-glutamate-meso-diaminopimelate muropeptidase
           (putative) [Lactobacillus plantarum WCFS1]
          Length = 370

 Score = 35.8 bits (81), Expect = 0.43
 Identities = 36/123 (29%), Positives = 54/123 (43%)
 Frame = +3

Query: 204 PSLYIMKKMLDIPDARDLKSTFV*ATSACSLISLEMSGTSTCKMSAAAAIDGLSLPGQDT 383
           P+L I  K ++IP  +  +      T+A           S+ K ++AA     S   Q T
Sbjct: 77  PNLIIAGKTINIPGVKTGEKVTTKTTTA---------SASSAKSTSAAT----STSSQAT 123

Query: 384 NQFRTRGSTTSVSRMSCAACSWTHGSARFAAQGATTTLTTSTARGTRKTSMPRLPASSSS 563
           +   T  STTS S  S A  S    S+  A   +T+T + S+   +  TS     ASSS+
Sbjct: 124 SAAATSSSTTSASSTSQAVSS----SSVAAQSSSTSTASASSVTSSASTSSVASQASSSA 179

Query: 564 PTA 572
            T+
Sbjct: 180 VTS 182



EST assemble image


clone accession position
1 LC061h07_r AV623306 1 469
2 HCL013h02_r AV640296 322 573




Chlamydomonas reinhardtii
Kazusa DNA Research Institute