KCC002284A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002284A_C01 KCC002284A_c01
gcgGTCACCTCACCCGTGTCACAATCCCTCTCCTACAACGACCCTAGGTCGCGCGCGCAC
AGACAGAGATAGGGCAGTAAGCCATGTTGCACTCTCGGCCGGCTCCGTTAGGATGGCTGA
CTGGCCAGGCTCTCGAACAACCTACCAAAGACGTCGATGGTATTACCTGAGGTGTCGCGG
CCGAGCCTGCTGGCCTGCCTCGCGACACATTGACTTCGTTGGCCGCGGCCCGCTCGCATT
CGCGAGCGCGTTGGCTGCAGCCGCCCCACAAGCAAGCTACAAGCCCGTCTGCGCAGCTCC
AACCTCCTTGCGGGTTGCCTCAGCTCTGCACTGCTCATCAAGAGCTGCCCATTGACGCGC
GCGCTCGACCCCCCCAAGAGACCATTTCTTCCAAGGTGACTGACGCGCCAAGCAGTCGAC
GTCTCGTCTGGCTTTCGACACCATCCCCCATCCCCCGCGCTGTCAAGGGCGCTCCAGCGA
CTGGGCCTGAAGAGATT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002284A_C01 KCC002284A_c01
         (497 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]              37  0.10
ref|XP_154933.1| hypothetical protein XP_154933 [Mus musculus]         37  0.10
ref|XP_306673.1| ENSANGP00000022436 [Anopheles gambiae] gi|30179...    35  0.51
pir||T10741 extensin-like protein PRP5 - Persian tobacco gi|2653...    34  0.86
dbj|BAB55514.1| P0638D12.22 [Oryza sativa (japonica cultivar-gro...    34  0.86

>gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]
          Length = 1016

 Score = 37.4 bits (85), Expect = 0.10
 Identities = 22/76 (28%), Positives = 36/76 (46%)
 Frame = +3

Query: 261 PPHKQATSPSAQLQPPCGLPQLCTAHQELPIDARARPPQETISSKVTDAPSSRRLVWLST 440
           PP ++ T PS   +PP   P      + LP  +++ PP+E +SS      SS     +S+
Sbjct: 699 PPQEKPTPPSTPSKPPPPSPV-----ETLPPPSKSSPPEEPVSSPPQAPKSSSPPAPVSS 753

Query: 441 PSPIPRAVKGAPATGP 488
           P P+  +    P + P
Sbjct: 754 PPPLKSSPPPVPESSP 769

>ref|XP_154933.1| hypothetical protein XP_154933 [Mus musculus]
          Length = 292

 Score = 37.4 bits (85), Expect = 0.10
 Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +3

Query: 132 LEQPTKDVDGI---T*GVAAEPAGLPRDTLTSLAAARSHSRARWLQPPHKQATSPSAQLQ 302
           L QP  DV  +     GV A P    R      AAA         + P  +AT+P   L 
Sbjct: 37  LGQPGGDVTAMQTAASGVRAAPGTWVRTLTGKDAAAEDKVHRPPARAPRSEATAPGRSLD 96

Query: 303 PPCGLPQLCTAHQEL-PIDARARPPQET 383
           P   LP  C AHQ   P+ +RA  P  T
Sbjct: 97  PALWLPVPCPAHQAAQPLSSRACQPPVT 124

>ref|XP_306673.1| ENSANGP00000022436 [Anopheles gambiae] gi|30179615|gb|EAA45894.1|
           ENSANGP00000022436 [Anopheles gambiae str. PEST]
          Length = 182

 Score = 35.0 bits (79), Expect = 0.51
 Identities = 44/133 (33%), Positives = 54/133 (40%), Gaps = 17/133 (12%)
 Frame = +2

Query: 32  PTTTLGRARTDRDRAVSHVALSAGSV-RMADWPGSRTTYQRRR---------WYYL---- 169
           P    G  RT R   VS   LSA SV R + W GS   +  R          W  L    
Sbjct: 51  PLAQGGSYRTRRSHRVSS-GLSAASVQRPSRWHGSLCLWIPRNIGPPPPQTPWPRLLSHH 109

Query: 170 RCRGRACW--PASRHIDFVGRGPLAFASALAAAAPQASYKPVCAAPT-SLRVASALHCSS 340
           RC G+     P   HI   G G     S+ AA   ++SY     AP    R  S L C++
Sbjct: 110 RCIGQPATHHPLQPHIK--GDGTFRPGSSPAARHRRSSYPAAARAPHHQRRHVSRLGCNA 167

Query: 341 RAAH*RARSTPPR 379
            A+H R R  PP+
Sbjct: 168 AASHHRRRHIPPQ 180

>pir||T10741 extensin-like protein PRP5 - Persian tobacco
           gi|2653671|gb|AAC15893.1| 120 kDa style glycoprotein
           [Nicotiana alata]
          Length = 461

 Score = 34.3 bits (77), Expect = 0.86
 Identities = 23/68 (33%), Positives = 30/68 (43%), Gaps = 1/68 (1%)
 Frame = +3

Query: 261 PPHKQATSPSAQLQPPCGLPQLCTAHQELPIDARARPPQETIS-SKVTDAPSSRRLVWLS 437
           PP K    P   +QPP   P    A Q  P    A+PP +  S S     P+++R    S
Sbjct: 96  PPAKSPPLPPPPVQPPKQSPPPSPAKQPPPPPPSAKPPVKPPSPSPAAQPPATQRATPPS 155

Query: 438 TPSPIPRA 461
            P P+ RA
Sbjct: 156 QPPPMQRA 163

>dbj|BAB55514.1| P0638D12.22 [Oryza sativa (japonica cultivar-group)]
          Length = 201

 Score = 34.3 bits (77), Expect = 0.86
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
 Frame = -3

Query: 447 GMVSKARRDVDCLARQSPWKKWSLGGVERARQWA--ALDEQCRAEATRKEVGAAQTGL*L 274
           G  S   R    + R S W+KWS  GVE  R+W+  A++   R+   R  +G  +     
Sbjct: 55  GARSGEERSDGGVVRWSAWRKWS-RGVEAWRRWSDEAVERDERSRERRLGLGFEERRRRR 113

Query: 273 ACGAAAANALANASGP-------RPTKSM--CREAGQQARPRH 172
           +  A AA       GP       RP +S   C  +   ARP+H
Sbjct: 114 SGAAGAAYICEGGDGPAGWAARARPCRSTVPCWPSVPMARPKH 156



EST assemble image


clone accession position
1 MXL042c12_r BP095469 1 380
2 HCL012d09_r AV640221 4 365
3 MX043g07_r BP087796 5 444
4 LC057a12_r AV622960 9 497




Chlamydomonas reinhardtii
Kazusa DNA Research Institute