KCC002283A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002283A_C01 KCC002283A_c01
tCCTTGTGCATTCGGTTTTACCAATCGCCCAATTTATAAAAGTTGCCGCGCAAGTGTTGA
CACGCGAGCAGAGTTGAGGCCCCTTTCGTTTTCGCGCCGGTGACACGATGCAGTGCGCCC
TGCATGCATCGCCCCGCGCGGGCGTGCAGGTGCGGTCGCGGACTTCTGCAGACCGCATCC
TCCCGGGGCCGGTGCTGCGGTCGCCGCTTGGGCCGCTGTCTAGCAGGGCCCCGTTCTCAA
CTTCGACTCTAAAGCACCAGCCTGAGCAGCCATCGTCCCAGGTCGCTTGCCCCGCGTCAG
TAGACTATGGCTATCCTTCTGCTCCGGAGCTGCCGCCTGAGCGCATGGGCGAGGCTGCTC
GTCGCGCGCTGTCTCGCGCGACCTCGGCCGTGCGCCGGTATGGCTGGTTGAGCTTCTGGG
CTCAGCTCACGCTGTCGGTGGTGGGAGGCGTCATTCTGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002283A_C01 KCC002283A_c01
         (460 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_294181.1| hypothetical protein [Deinococcus radiodurans] ...    42  0.002
gb|AAN10251.1| putative secreted protein [Streptomyces viridifac...    40  0.012
ref|NP_565372.1| expressed protein [Arabidopsis thaliana] gi|254...    39  0.028
dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir...    38  0.047
ref|NP_510854.1| carboxyl ester lipase like (XS293) [Caenorhabdi...    38  0.062

>ref|NP_294181.1| hypothetical protein [Deinococcus radiodurans]
           gi|7472740|pir||F75518 hypothetical protein -
           Deinococcus radiodurans (strain R1)
           gi|6458143|gb|AAF10038.1|AE001904_14 hypothetical
           protein [Deinococcus radiodurans]
          Length = 839

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
 Frame = -2

Query: 441 PPTA*AEPRSSTSHTGARPRSRETARDEQP------RPCAQAAAPEQKDSHSLLTRGKRP 280
           PPT   E  + T  + A P S   A +E        RP   A++PE     ++  RG+ P
Sbjct: 304 PPTPTRET-AQTEASPAAPNSSAAAPNEPASEPVAGRPGTAASSPESASPVTVTPRGETP 362

Query: 279 GTMAAQAGALESKLRTGPC*TAAQAATAAPAPGGCGLQKSATAPARPRGAMHAGRTA 109
            T A+       ++   P  +A++ A+AA  PG     ++   PA P  A  AGR++
Sbjct: 363 DTAASAGTPSAGRVTPAPAPSASEGASAARTPGAG--SQTPPIPATPIPATPAGRSS 417

>gb|AAN10251.1| putative secreted protein [Streptomyces viridifaciens]
          Length = 306

 Score = 40.0 bits (92), Expect = 0.012
 Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
 Frame = -2

Query: 441 PPTA*AEPRSS----TSHTGA--RPRSRETARDEQPRPCAQAAAPEQK-----DSHSLLT 295
           PP+A A P  S    T+ + A  RP +  +     PRPCA+ AA E        +H    
Sbjct: 110 PPSAPASPSGSAPAATAQSAAVTRPAAPASPASHLPRPCAEPAASEHSRTAPPATHPAAD 169

Query: 294 RGKRPGTMAAQAGALESKLRTGPC*TAAQAATAAPAPGGCGLQKSATAPARPRGAMHAG 118
               P    AQA A  S +R+     A  A  AAP         +A  PA P G  + G
Sbjct: 170 PSTSPAGTVAQASA-ASAIRSAGTPVAQAAQHAAPV---ASASSAAVPPAAPSGPAYQG 224

>ref|NP_565372.1| expressed protein [Arabidopsis thaliana] gi|25411626|pir||B84527
           hypothetical protein At2g15290 [imported] - Arabidopsis
           thaliana gi|4662632|gb|AAD26904.1| expressed protein
           [Arabidopsis thaliana] gi|15982807|gb|AAL09751.1|
           At2g15290/F27O10.6 [Arabidopsis thaliana]
           gi|17528962|gb|AAL38691.1| unknown protein [Arabidopsis
           thaliana] gi|21689685|gb|AAM67464.1| unknown protein
           [Arabidopsis thaliana]
          Length = 296

 Score = 38.9 bits (89), Expect = 0.028
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
 Frame = +3

Query: 123 HASPRAGVQVRSRTSADRILPGPVLRSPLGPLSSRAPFSTSTLKHQPEQPSSQVACPASV 302
           H+     +  RS    + +L  P  ++ +    S    S    +    +PS     P++V
Sbjct: 25  HSFNHQSLSTRSLPLFNPLLLAPKKKTTISSYQSPPSLSVYGFQIGGSKPSFT---PSTV 81

Query: 303 DYGYPSAP-------ELPPERMGEAARRALSRATSAVRRYGWLSFWAQLTLSVVGGVIL 458
            + YP++P       E+   ++ + A+R L + +   +R G + FW QL  +VV  VIL
Sbjct: 82  AFSYPTSPSSVPGDNEVDKAKLAQVAKR-LEKTSRYFKRLGSIGFWGQLVSTVVAAVIL 139

>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
          Length = 3326

 Score = 38.1 bits (87), Expect = 0.047
 Identities = 32/103 (31%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
 Frame = -2

Query: 444  PPPTA*AEPRSSTSHTGARPRSRETARDEQPRPCAQAAAPEQKDSHSLLTRGKRPGTMAA 265
            PPP A   P   TS     P      R   P   A  AAP    + +       P   AA
Sbjct: 2823 PPPVAATGPTRPTSPATPTPTVAAAGRASAPPAPAAPAAPAAPAAPAAPAAPAAPAAPAA 2882

Query: 264  QAGALESKLRTGPC*TAAQAATAAP-APGGCGLQKSATAPARP 139
             A          P   AA AA AAP AP       +  APA P
Sbjct: 2883 PAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAP 2925

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 31/100 (31%), Positives = 35/100 (35%)
 Frame = -2

Query: 444  PPPTA*AEPRSSTSHTGARPRSRETARDEQPRPCAQAAAPEQKDSHSLLTRGKRPGTMAA 265
            P PT  A  R+S     A P     A    P   A  AAP    + +       P   AA
Sbjct: 2840 PTPTVAAAGRASAPPAPAAP-----AAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAA 2894

Query: 264  QAGALESKLRTGPC*TAAQAATAAPAPGGCGLQKSATAPA 145
             A          P   AA AA AAPA        +A APA
Sbjct: 2895 PAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPA 2934

>ref|NP_510854.1| carboxyl ester lipase like (XS293) [Caenorhabditis elegans]
           gi|25513577|pir||D89756 protein T23E7.2b [imported] -
           Caenorhabditis elegans gi|2435547|gb|AAB71258.1|
           Hypothetical protein T23E7.2b [Caenorhabditis elegans]
          Length = 880

 Score = 37.7 bits (86), Expect = 0.062
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = -2

Query: 354 PRPCAQAAAPEQKDSHSLLTRGKRPGTMAAQAGALESKLRTGPC*TAAQAATAAPAPGGC 175
           PR  A +  P    S+  +  G  PGT +    + ++     P  TA  AATA PA    
Sbjct: 323 PRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQESAKATPAATPAATATPAATATPA--AT 380

Query: 174 GLQKSATA------PARPRGAMHAGRTAS 106
           G  K+ TA      PA PR ++ A  T S
Sbjct: 381 GTPKADTAFNFEETPATPRSSVPATPTES 409



EST assemble image


clone accession position
1 HCL031c04_r AV641296 1 205
2 HCL012c12_r AV640217 2 268
3 HCL067b07_r AV643294 3 460
4 HCL058f05_r AV642818 7 446




Chlamydomonas reinhardtii
Kazusa DNA Research Institute