KCC002275A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002275A_C01 KCC002275A_c01
CGCTGCCTCGCATAGTTGTTTTATGGTTTAGGTAGAGATAAGGCAGAACGGGCCTTGACC
AGCTTCAAATTTATAGCTTCCTAAACGCATAGGCCTTTTAGTTTCTTAGTGGCTATAGTA
GCCATGCTCGCTTTGCCGAGTCTCGCGATAGCGGCGCCTTTGTCGCATGGACTCGCGGTC
CTTGCGGCCCAGCCTGCTCTATGGCAGGCGTTTGAGCGGCCGCGGGAAACTTGCTCCGGA
GTGCAGCCCGCTGCAGGTCCGGGCCCCAGCTCTCAGCGGCATCGACCAGGGCTGCTGCAG
GGCACCCAGGTCCGGTCTATGTGCCGCTGGCTGGGCGAGACGCGGTGCAGCACTGTCACA
AATGTGGACATTAACGCTGCAAATACCCCGGCCAGTGCCGGGCCGCTGGGCCTCGAAAGC
AAGGTCCACAGTGACACAGACGTGAGGATGGACGCCCAGGTCATTTTCGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002275A_C01 KCC002275A_c01
         (471 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_304125.1| hypothetical protein XP_304125 [Homo sapiens]         35  0.44
gb|AAC72031.1| putative ABC transporter [Myxococcus xanthus]           34  0.75
dbj|BAA88546.1| unnamed protein product [Oryza sativa (japonica ...    34  0.98
dbj|BAC04036.1| unnamed protein product [Homo sapiens]                 34  0.98
ref|ZP_00093441.1| COG0494: NTP pyrophosphohydrolases including ...    33  1.3

>ref|XP_304125.1| hypothetical protein XP_304125 [Homo sapiens]
          Length = 688

 Score = 35.0 bits (79), Expect = 0.44
 Identities = 29/105 (27%), Positives = 40/105 (37%), Gaps = 3/105 (2%)
 Frame = -3

Query: 457 GRPSSRLCHCGP---CFRGPAARHWPGYLQR*CPHL*QCCTASRPASGT*TGPGCPAAAL 287
           GR S+ L  C P   C RG  ARHWP   +    H      A     G   GPG  A A 
Sbjct: 438 GRTSALLSLCCPDKTCPRGQGARHWPSLKEHRSCHGRSRSAAKADIEGATAGPGQVAWAA 497

Query: 286 VDAAESWGPDLQRAALRSKFPAAAQTPAIEQAGPQGPRVHATKAP 152
           V      G   +     S+     ++  ++ AG    ++   +AP
Sbjct: 498 VRGLLGTGQGSEGTPTASEESLETRSDHMDPAGQVQGQLPIPRAP 542

>gb|AAC72031.1| putative ABC transporter [Myxococcus xanthus]
          Length = 709

 Score = 34.3 bits (77), Expect = 0.75
 Identities = 17/41 (41%), Positives = 26/41 (62%)
 Frame = +1

Query: 106 LVAIVAMLALPSLAIAAPLSHGLAVLAAQPALWQAFERPRE 228
           LV +   L+LP L++A    H L+ LA+   +++AFE PRE
Sbjct: 398 LVILSTSLSLPMLSVARDFPHILSTLASLSRVFKAFELPRE 438

>dbj|BAA88546.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
           gi|6721537|dbj|BAA89567.1| unnamed protein product
           [Oryza sativa (japonica cultivar-group)]
          Length = 1080

 Score = 33.9 bits (76), Expect = 0.98
 Identities = 24/56 (42%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
 Frame = +3

Query: 297 AGHPGPVYVPLAGRDAVQHCHKCGH*RCKYPGQCRAA---GPRKQGPQ*HRREDGR 455
           AG PGP     A  DA QH  +  H     PG+ R     GPR+ GP+  RR DGR
Sbjct: 744 AGAPGPGRRRRAVHDA-QHGVRRRHAGLHQPGRARLVQGRGPRRDGPRRRRRLDGR 798

>dbj|BAC04036.1| unnamed protein product [Homo sapiens]
          Length = 279

 Score = 33.9 bits (76), Expect = 0.98
 Identities = 26/63 (41%), Positives = 31/63 (48%)
 Frame = +2

Query: 212 LSGRGKLAPECSPLQVRAPALSGIDQGCCRAPRSGLCAAGWARRGAALSQMWTLTLQIPR 391
           L G G+ AP C PL+VR P  +G     CR P S  C  GW    A+ S  W L +  P 
Sbjct: 64  LRGPGR-APTCWPLRVRMPWRAG--SRPCRVPASTTC--GW--WCASWSSSWRLYVAWPC 116

Query: 392 PVP 400
           P P
Sbjct: 117 PSP 119

>ref|ZP_00093441.1| COG0494: NTP pyrophosphohydrolases including oxidative damage
           repair enzymes [Novosphingobium aromaticivorans]
          Length = 217

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 20/52 (38%), Positives = 25/52 (47%)
 Frame = +1

Query: 160 LSHGLAVLAAQPALWQAFERPRETCSGVQPAAGPGPSSQRHRPGLLQGTQVR 315
           LS G    A  P LW+AF+   ++ S  QP      S  R R GL +GT  R
Sbjct: 6   LSGGYRTQAGLPDLWRAFDHAADSASDRQPR-----SDSRQRAGLWRGTDPR 52



EST assemble image


clone accession position
1 MXL042c08_r BP095467 1 475
2 LCL099d03_r AV631759 73 551
3 MXL009h12_r BP093548 75 316
4 HCL017f04_r AV640512 78 553
5 LCL047c02_r AV628796 82 441
6 HCL011c03_r AV640148 83 471
7 LCL037h04_r AV628179 85 551
8 MXL005e10_r BP093245 105 538
9 MXL059d03_r BP096477 105 498
10 LCL093d11_r AV631411 396 540




Chlamydomonas reinhardtii
Kazusa DNA Research Institute