KCC002275A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC002275A_C01 KCC002275A_c01
CGCTGCCTCGCATAGTTGTTTTATGGTTTAGGTAGAGATAAGGCAGAACGGGCCTTGACC
AGCTTCAAATTTATAGCTTCCTAAACGCATAGGCCTTTTAGTTTCTTAGTGGCTATAGTA
GCCATGCTCGCTTTGCCGAGTCTCGCGATAGCGGCGCCTTTGTCGCATGGACTCGCGGTC
CTTGCGGCCCAGCCTGCTCTATGGCAGGCGTTTGAGCGGCCGCGGGAAACTTGCTCCGGA
GTGCAGCCCGCTGCAGGTCCGGGCCCCAGCTCTCAGCGGCATCGACCAGGGCTGCTGCAG
GGCACCCAGGTCCGGTCTATGTGCCGCTGGCTGGGCGAGACGCGGTGCAGCACTGTCACA
AATGTGGACATTAACGCTGCAAATACCCCGGCCAGTGCCGGGCCGCTGGGCCTCGAAAGC
AAGGTCCACAGTGACACAGACGTGAGGATGGACGCCCAGGTCATTTTCGAG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002275A_C01 KCC002275A_c01
(471 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_304125.1| hypothetical protein XP_304125 [Homo sapiens] 35 0.44
gb|AAC72031.1| putative ABC transporter [Myxococcus xanthus] 34 0.75
dbj|BAA88546.1| unnamed protein product [Oryza sativa (japonica ... 34 0.98
dbj|BAC04036.1| unnamed protein product [Homo sapiens] 34 0.98
ref|ZP_00093441.1| COG0494: NTP pyrophosphohydrolases including ... 33 1.3
>ref|XP_304125.1| hypothetical protein XP_304125 [Homo sapiens]
Length = 688
Score = 35.0 bits (79), Expect = 0.44
Identities = 29/105 (27%), Positives = 40/105 (37%), Gaps = 3/105 (2%)
Frame = -3
Query: 457 GRPSSRLCHCGP---CFRGPAARHWPGYLQR*CPHL*QCCTASRPASGT*TGPGCPAAAL 287
GR S+ L C P C RG ARHWP + H A G GPG A A
Sbjct: 438 GRTSALLSLCCPDKTCPRGQGARHWPSLKEHRSCHGRSRSAAKADIEGATAGPGQVAWAA 497
Query: 286 VDAAESWGPDLQRAALRSKFPAAAQTPAIEQAGPQGPRVHATKAP 152
V G + S+ ++ ++ AG ++ +AP
Sbjct: 498 VRGLLGTGQGSEGTPTASEESLETRSDHMDPAGQVQGQLPIPRAP 542
>gb|AAC72031.1| putative ABC transporter [Myxococcus xanthus]
Length = 709
Score = 34.3 bits (77), Expect = 0.75
Identities = 17/41 (41%), Positives = 26/41 (62%)
Frame = +1
Query: 106 LVAIVAMLALPSLAIAAPLSHGLAVLAAQPALWQAFERPRE 228
LV + L+LP L++A H L+ LA+ +++AFE PRE
Sbjct: 398 LVILSTSLSLPMLSVARDFPHILSTLASLSRVFKAFELPRE 438
>dbj|BAA88546.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|6721537|dbj|BAA89567.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 1080
Score = 33.9 bits (76), Expect = 0.98
Identities = 24/56 (42%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Frame = +3
Query: 297 AGHPGPVYVPLAGRDAVQHCHKCGH*RCKYPGQCRAA---GPRKQGPQ*HRREDGR 455
AG PGP A DA QH + H PG+ R GPR+ GP+ RR DGR
Sbjct: 744 AGAPGPGRRRRAVHDA-QHGVRRRHAGLHQPGRARLVQGRGPRRDGPRRRRRLDGR 798
>dbj|BAC04036.1| unnamed protein product [Homo sapiens]
Length = 279
Score = 33.9 bits (76), Expect = 0.98
Identities = 26/63 (41%), Positives = 31/63 (48%)
Frame = +2
Query: 212 LSGRGKLAPECSPLQVRAPALSGIDQGCCRAPRSGLCAAGWARRGAALSQMWTLTLQIPR 391
L G G+ AP C PL+VR P +G CR P S C GW A+ S W L + P
Sbjct: 64 LRGPGR-APTCWPLRVRMPWRAG--SRPCRVPASTTC--GW--WCASWSSSWRLYVAWPC 116
Query: 392 PVP 400
P P
Sbjct: 117 PSP 119
>ref|ZP_00093441.1| COG0494: NTP pyrophosphohydrolases including oxidative damage
repair enzymes [Novosphingobium aromaticivorans]
Length = 217
Score = 33.5 bits (75), Expect = 1.3
Identities = 20/52 (38%), Positives = 25/52 (47%)
Frame = +1
Query: 160 LSHGLAVLAAQPALWQAFERPRETCSGVQPAAGPGPSSQRHRPGLLQGTQVR 315
LS G A P LW+AF+ ++ S QP S R R GL +GT R
Sbjct: 6 LSGGYRTQAGLPDLWRAFDHAADSASDRQPR-----SDSRQRAGLWRGTDPR 52
EST assemble image
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|
|
|
clone |
accession |
position |
1 |
MXL042c08_r |
BP095467 |
1 |
475 |
2 |
LCL099d03_r |
AV631759 |
73 |
551 |
3 |
MXL009h12_r |
BP093548 |
75 |
316 |
4 |
HCL017f04_r |
AV640512 |
78 |
553 |
5 |
LCL047c02_r |
AV628796 |
82 |
441 |
6 |
HCL011c03_r |
AV640148 |
83 |
471 |
7 |
LCL037h04_r |
AV628179 |
85 |
551 |
8 |
MXL005e10_r |
BP093245 |
105 |
538 |
9 |
MXL059d03_r |
BP096477 |
105 |
498 |
10 |
LCL093d11_r |
AV631411 |
396 |
540 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute