Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002272A_C01 KCC002272A_c01
(534 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC79732.1| putative cytoskeletal protein-like protein [Oryz... 49 5e-05
sp|P31271|HXAD_HUMAN Homeobox protein Hox-A13 (Hox-1J) gi|183235... 45 8e-04
ref|NP_000513.2| homeobox protein A13; homeobox protein HOXA13; ... 43 0.002
gb|AAD54640.1| transcription factor HOXA13 [Felis catus] 43 0.003
ref|NP_032290.1| homeobox protein A13; hypodactyly [Mus musculus... 43 0.003
>dbj|BAC79732.1| putative cytoskeletal protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 355
Score = 48.5 bits (114), Expect = 5e-05
Identities = 32/87 (36%), Positives = 43/87 (48%), Gaps = 12/87 (13%)
Frame = -2
Query: 455 LLAAPAAEAASLMERWRMAGASMGRGRAEILAVAAPGLDGTATPQP------------RR 312
LL+ PA+ AA+ R ++ G S RA +A + P L PQP RR
Sbjct: 172 LLSPPASAAAADESRRQVVGFSQAAARAAAMAASGPALSLQPQPQPAAAQQQQQARKTRR 231
Query: 311 CWSPAGHRTWLASIPLQRLWMPPAAAP 231
CWSP HR ++A+ LQ+L P A P
Sbjct: 232 CWSPDLHRKFVAA--LQQLGGPQVATP 256
>sp|P31271|HXAD_HUMAN Homeobox protein Hox-A13 (Hox-1J) gi|1832353|gb|AAC50993.1|
transcription factor HOXA13 [Homo sapiens]
Length = 388
Score = 44.7 bits (104), Expect = 8e-04
Identities = 43/118 (36%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Frame = +1
Query: 169 ARQLAPAEVPAGGLGTARGPHGAAAGGIHKRCKGMLASQVRCPAGLQQRRGCGVAVPSKP 348
A A A A G G PH AAA A+ A Q R P P
Sbjct: 40 AAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAP 99
Query: 349 GAATARISAL-PLPMLAPAMRQRSIKLAASAAGAASSGGADDKKDLPVPAGEAAAADA 519
GAA+A SA P A A + AA+AA A+SSGG P PAG AAA A
Sbjct: 100 GAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGG-------PGPAGPAAAEAA 150
>ref|NP_000513.2| homeobox protein A13; homeobox protein HOXA13; homeo box 1J;
transcription factor HOXA13 [Homo sapiens]
Length = 388
Score = 43.1 bits (100), Expect = 0.002
Identities = 42/118 (35%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = +1
Query: 169 ARQLAPAEVPAGGLGTARGPHGAAAGGIHKRCKGMLASQVRCPAGLQQRRGCGVAVPSKP 348
A A A A G G PH AAA A+ A Q R P P
Sbjct: 40 AAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAP 99
Query: 349 GAATARISAL-PLPMLAPAMRQRSIKLAASAAGAASSGGADDKKDLPVPAGEAAAADA 519
GAA+A SA P A A + AA+AA A+SSGG P PAG A A A
Sbjct: 100 GAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGG-------PGPAGPAGAEAA 150
>gb|AAD54640.1| transcription factor HOXA13 [Felis catus]
Length = 131
Score = 42.7 bits (99), Expect = 0.003
Identities = 42/118 (35%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Frame = +1
Query: 169 ARQLAPAEVPAGGLGTARGPHGAAAGGIHKRCKGMLASQVRCPAGLQQRRGCGVAVPSKP 348
A A A A G G PH AAA A+ A Q R P P
Sbjct: 18 AAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQGRNLMAHPAPLAP 77
Query: 349 GAATARISAL-PLPMLAPAMRQRSIKLAASAAGAASSGGADDKKDLPVPAGEAAAADA 519
GAA A SA P A A + AA+AA A+SSGG P PAG A A A
Sbjct: 78 GAAAAYNSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGG-------PGPAGPAGAEAA 128
>ref|NP_032290.1| homeobox protein A13; hypodactyly [Mus musculus]
gi|4033408|sp|Q62424|HXAD_MOUSE Homeobox protein Hox-A13
(Hox-1.10) gi|1399859|gb|AAB03322.1| transcription
factor HOXA13
Length = 386
Score = 42.7 bits (99), Expect = 0.003
Identities = 42/118 (35%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Frame = +1
Query: 169 ARQLAPAEVPAGGLGTARGPHGAAAGGIHKRCKGMLASQVRCPAGLQQRRGCGVAVPSKP 348
A A A A G G PH AAA A+ A Q R P P
Sbjct: 40 AAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAP 99
Query: 349 GAATARISAL-PLPMLAPAMRQRSIKLAASAAGAASSGGADDKKDLPVPAGEAAAADA 519
GAA A SA P A A + AA+AA A+SSGG P PAG A A A
Sbjct: 100 GAAAAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGG-------PGPAGPAGAEAA 150
