KCC002266A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002266A_C01 KCC002266A_c01
ctcgcccggtattcAAGACATCAAGCAGCAATAGTTACAACAAGCGTACTCGAGCCAAAG
CGCAAACACACCGATCGCCTTTATATATCTCCTCGGCGAGCCCCTACACGCCTGTTTCTT
AACGTCATCGCACAAGTCTACTTCAACAGGGCTATCCGATGGCTGCGACAACCTGGCGAA
CCACGGGCGGTGGGCTGGGCATCGGCGCTCGCGTGCCACATTTAGGTCGAGTGCCGCCAC
GGAGCGTGCGGGTGCAAGCTGTGCACACCTCTCCCTCATTCCTCAATCCACACACCATCC
TTGGCGTGTCTGCCACCGCGGATGTCAAGGAAGTCAAGCGTGCCTACCGCAAACTCGCGC
TACAGTACCACCCCGACGTGTGTAAGACGGAGGACGGCCACGAGCGCTTCATGGCACTGA
CGCAGGCGTACGAGATGCTGCTAGGGCGGGCGGAGGGCAAGACAGACCCCGGCCACGCCG
CGTCCTCGGGCTGGGACTTCCACGACTGGTACTGGAACTTCAAGATGCAGCGGTCCTGGG
AGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002266A_C01 KCC002266A_c01
         (543 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_200769.1| DnaJ protein family [Arabidopsis thaliana] gi|9...    67  1e-10
ref|NP_116638.1| involved in protection against heat-induced pro...    63  2e-09
ref|NP_746953.1| curved-DNA-binding protein, DnaJ family [Pseudo...    61  1e-08
ref|ZP_00072812.1| COG0484: DnaJ-class molecular chaperone with ...    59  3e-08
sp|Q9LCQ4|DNAJ_BRECH Chaperone protein dnaJ gi|6855462|dbj|BAA90...    59  4e-08

>ref|NP_200769.1| DnaJ protein family [Arabidopsis thaliana]
           gi|9758827|dbj|BAB09499.1| gene_id:MTH12.18~unknown
           protein [Arabidopsis thaliana]
          Length = 268

 Score = 67.4 bits (163), Expect = 1e-10
 Identities = 39/111 (35%), Positives = 62/111 (55%)
 Frame = +3

Query: 111 PVS*RHRTSLLQQGYPMAATTWRTTGGGLGIGARVPHLGRVPPRSVRVQAVHTSPSFLNP 290
           P+S  +R + L  G+P+ +  +   GG +G+ +       +  R  R+       S   P
Sbjct: 23  PISFLYRINFL--GFPVTSCCY---GGDIGLASLYKRRSSIQRRRNRIFVTRARSS---P 74

Query: 291 HTILGVSATADVKEVKRAYRKLALQYHPDVCKTEDGHERFMALTQAYEMLL 443
           + ILGVS +A  +++KRAYRKLAL+YHPDV K  +  E+F+ +  AY  L+
Sbjct: 75  YEILGVSPSATPQDIKRAYRKLALKYHPDVNKEANAQEKFLKIKHAYTTLI 125

>ref|NP_116638.1| involved in protection against heat-induced protein aggregation but
           not necessary for protein import into the mitochondrion;
           Mdj1p [Saccharomyces cerevisiae]
           gi|462580|sp|P35191|MDJ1_YEAST MDJ1 protein,
           mitochondrial precursor gi|481583|pir||S38898 heat shock
           protein MDJ1 precursor - yeast (Saccharomyces
           cerevisiae) gi|431910|emb|CAA82189.1| Mdj1p heat shock
           protein [Saccharomyces cerevisiae]
           gi|559936|emb|CAA86351.1| mdj1 [Saccharomyces
           cerevisiae] gi|836738|dbj|BAA09222.1| MDJ1 protein
           precursor [Saccharomyces cerevisiae]
          Length = 511

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
 Frame = +3

Query: 228 RVPPRSVRVQAVHTSPSFLNPHTILGVSATADVKEVKRAYRKLALQYHPDVCKTEDGHER 407
           R+P  S    A+  + +F +P+  LG+  +A   E+K+AY KLA +YHPD+ K  D  ++
Sbjct: 42  RIPKSSFHTSAIRNNEAFKDPYDTLGLKKSATGAEIKKAYYKLAKKYHPDINKEPDAEKK 101

Query: 408 FMALTQAYEMLL------------------GRAEGKTDPGHAASSGWDFHDW 509
           F  L  AYE+L                   G A G    G  +  G  FHD+
Sbjct: 102 FHDLQNAYEILSDETKRQQYDQFGPAAFGGGGAAGGAGGGSGSPFGSQFHDF 153

>ref|NP_746953.1| curved-DNA-binding protein, DnaJ family [Pseudomonas putida KT2440]
           gi|24986611|gb|AAN70417.1|AE016683_8 curved-DNA-binding
           protein, DnaJ family [Pseudomonas putida KT2440]
          Length = 319

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 29/54 (53%), Positives = 36/54 (65%)
 Frame = +3

Query: 279 FLNPHTILGVSATADVKEVKRAYRKLALQYHPDVCKTEDGHERFMALTQAYEML 440
           F + + ILGV  TAD K +K AYRKLA +YHPDV K  D  E+F    +AYE+L
Sbjct: 3   FKDYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVL 56

>ref|ZP_00072812.1| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger
           domain [Trichodesmium erythraeum IMS101]
          Length = 374

 Score = 59.3 bits (142), Expect = 3e-08
 Identities = 28/50 (56%), Positives = 37/50 (74%)
 Frame = +3

Query: 291 HTILGVSATADVKEVKRAYRKLALQYHPDVCKTEDGHERFMALTQAYEML 440
           + ILGVS +AD +E+KRAYR+LA +YHPDV K     ERF  + +AYE+L
Sbjct: 6   YEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEIL 55

>sp|Q9LCQ4|DNAJ_BRECH Chaperone protein dnaJ gi|6855462|dbj|BAA90474.1| DnaJ
           [Brevibacillus choshinensis]
          Length = 375

 Score = 58.9 bits (141), Expect = 4e-08
 Identities = 26/50 (52%), Positives = 35/50 (70%)
 Frame = +3

Query: 291 HTILGVSATADVKEVKRAYRKLALQYHPDVCKTEDGHERFMALTQAYEML 440
           + +LGV   AD  E+K+AYRKLA QYHPDV K  D  E+F  + +AY++L
Sbjct: 6   YEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEEKFKEVKEAYDVL 55



EST assemble image


clone accession position
1 LCL032b10_r AV627797 1 199
2 LCL077h07_r AV630369 15 423
3 LCL077e06_r AV630340 19 320
4 HCL020a07_r AV640659 22 301
5 HCL010a07_r AV640083 22 275
6 HCL034e05_r AV641485 27 454
7 HCL032h07_r AV641399 34 408
8 HCL057d04_r AV642759 61 543




Chlamydomonas reinhardtii
Kazusa DNA Research Institute