KCC002264A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002264A_C01 KCC002264A_c01
cagaggcaggggtggcagagctatgcaagctgtgtggcgcaccctcatcccgaccattca
ctggtaacatcctTTACACATTGCAGTGGCTCTCACGTTACTACACGTTTTTAGGGTCCT
TGACTGCGAGTGCGAGCTCTGTATTTCTCTGTTTCAGCGGCCCTAGGCTCATGGATCCAT
CCATCTGATAGGTGCTAGCACTGTGGCCCGCCATTGTTAATAGAGACAGGGTCCTGATAG
CAGGTTTTGGCGAAGGGTTCGACATGGCCAGCTCGGAGCTGAAAGTCGTGGAGGTTCGCA
GCCCTCCTGCCGAACCGCTGCCTCCTTTATCTTCAGCGCAGGCGCAGGGCTTGCTTCCAG
CGCTTGGGAATGCTCTTCCCATCCCGGACGATAACGCACCGCCAGCAAATGGTGCATCTG
CAACAAACGGCGACCACTTGTTGCCGCACGGGAGCCCTCTGAAGGACGGAGCAGTGGGCG
GAGTGGTTTCGCAAGCCGCAGCGGTTGCCGGGAGTATCGCGTCGACCGTGAACGCACCAG
CTTCCAGCGAAATCAGCGAGGCAGCGATGCCGAGTATGAAAAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002264A_C01 KCC002264A_c01
         (584 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_569967.2| CG16902-PA [Drosophila melanogaster] gi|2283153...    41  0.011
pir||S35335 transcription factor MTF-1 - mouse                         40  0.018
gb|AAP31812.1| metal response element-binding transcription fact...    40  0.018
ref|XP_207848.1| similar to metal response element binding trans...    40  0.018
ref|NP_032662.2| metal response element binding transcription fa...    40  0.018

>ref|NP_569967.2| CG16902-PA [Drosophila melanogaster] gi|22831537|gb|AAF45702.3|
           CG16902-PA [Drosophila melanogaster]
          Length = 1543

 Score = 41.2 bits (95), Expect = 0.011
 Identities = 35/130 (26%), Positives = 50/130 (37%), Gaps = 3/130 (2%)
 Frame = -2

Query: 514 LPATAAACETTPPTAPSFRGLPCGNKWSPFVADAPFAGGALSSGMGRAFPSAGSKPCACA 335
           LP TAA+   T   A               VA     GGA + G G A  ++G+ PC   
Sbjct: 90  LPLTAASSAVTVSLAA-------------VVAAVAETGGAGAGGAGTAVTASGAGPCVST 136

Query: 334 ED---KGGSGSAGGLRTSTTFSSELAMSNPSPKPAIRTLSLLTMAGHSASTYQMDGSMSL 164
                   + S   L +S++ SS  + S  S  P     S  T    S+S+         
Sbjct: 137 SSTTAAAATSSTSSLSSSSSSSSSTSSSTSSASPTAGASSTATCPASSSSSSGNGSGGKS 196

Query: 163 GPLKQRNTEL 134
           G +KQ +TE+
Sbjct: 197 GSIKQEHTEI 206

>pir||S35335 transcription factor MTF-1 - mouse
          Length = 673

 Score = 40.4 bits (93), Expect = 0.018
 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +3

Query: 303 PPAEPLPPLSSAQAQGLLPALGNALPIPDDNAPPANGASATNGDHLLPHGSPLKDGAVGG 482
           PPA  L P S   A G  PAL     +P     P +   A N    LPH        V G
Sbjct: 443 PPAPSLGPGSQPAAFGSPPALLQPPEVP----VPHSTQFAANHQEFLPHPQAPPQTIVPG 498

Query: 483 --VVSQAAAVAGSIASTVNAPASSEISEAAMPSM 578
             VV+ A A A ++AS V APA  + +   +P+M
Sbjct: 499 LSVVAGAPASAATVASAVAAPAPPQSTTEPLPAM 532

>gb|AAP31812.1| metal response element-binding transcription factor 1 [Mus
           musculus]
          Length = 674

 Score = 40.4 bits (93), Expect = 0.018
 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +3

Query: 303 PPAEPLPPLSSAQAQGLLPALGNALPIPDDNAPPANGASATNGDHLLPHGSPLKDGAVGG 482
           PPA  L P S   A G  PAL     +P     P +   A N    LPH        V G
Sbjct: 443 PPAPSLGPGSQPAAFGSPPALLQPPEVP----VPHSTQFAANHQEFLPHPQAPPQTIVPG 498

Query: 483 --VVSQAAAVAGSIASTVNAPASSEISEAAMPSM 578
             VV+ A A A ++AS V APA  + +   +P+M
Sbjct: 499 LSVVAGAPASAATVASAVAAPAPPQSTTEPLPAM 532

>ref|XP_207848.1| similar to metal response element binding transcription factor 1
           [Mus musculus] gi|6900320|emb|CAB71344.1| heavy
           metal-responsiv etranscription factor [Mus musculus]
           gi|17389242|gb|AAH17679.1| Metal response element
           binding transcription factor 1 [Mus musculus]
          Length = 675

 Score = 40.4 bits (93), Expect = 0.018
 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +3

Query: 303 PPAEPLPPLSSAQAQGLLPALGNALPIPDDNAPPANGASATNGDHLLPHGSPLKDGAVGG 482
           PPA  L P S   A G  PAL     +P     P +   A N    LPH        V G
Sbjct: 443 PPAPSLGPGSQPAAFGSPPALLQPPEVP----VPHSTQFAANHQEFLPHPQAPPQTIVPG 498

Query: 483 --VVSQAAAVAGSIASTVNAPASSEISEAAMPSM 578
             VV+ A A A ++AS V APA  + +   +P+M
Sbjct: 499 LSVVAGAPASAATVASAVAAPAPPQSTTEPLPAM 532

>ref|NP_032662.2| metal response element binding transcription factor 1;
           metalloregulatory transcription factor; metal response
           element-binding transcription factor 1 [Mus musculus]
           gi|26326271|dbj|BAC26879.1| unnamed protein product [Mus
           musculus]
          Length = 675

 Score = 40.4 bits (93), Expect = 0.018
 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +3

Query: 303 PPAEPLPPLSSAQAQGLLPALGNALPIPDDNAPPANGASATNGDHLLPHGSPLKDGAVGG 482
           PPA  L P S   A G  PAL     +P     P +   A N    LPH        V G
Sbjct: 443 PPAPSLGPGSQPAAFGSPPALLQPPEVP----VPHSTQFAANHQEFLPHPQAPPQTIVPG 498

Query: 483 --VVSQAAAVAGSIASTVNAPASSEISEAAMPSM 578
             VV+ A A A ++AS V APA  + +   +P+M
Sbjct: 499 LSVVAGAPASAATVASAVAAPAPPQSTTEPLPAM 532



EST assemble image


clone accession position
1 LCL036c09_r AV628073 1 493
2 LCL026h04_r AV627445 74 412
3 MXL069a09_r BP097038 76 506
4 HCL009h10_r AV640079 90 236
5 MXL009a08_r BP093484 94 460
6 MXL022c04_r BP094378 97 584
7 HCL028b07_r AV641124 131 462




Chlamydomonas reinhardtii
Kazusa DNA Research Institute