KCC002261A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002261A_C01 KCC002261A_c01
CACATTACTTCTTACCTATCACATGTTGATTCGGACCTGAAAGCTGTTGCAACTGTGCAA
CATTGACGTCAACGCGCTTGCTCTGGGGCGATAATGGATGGAGCTTTAGGCAGACCCAGC
GCAGCATGTAGCTCTGCGTCGCTGCAGCTGCCGAGCCCTCGTTCGCGGTCGCGGGCTTCC
TCTCCTTCGTCGCGCGCGGCATCCCCTCTCCTTCAAACGCCGTGCTCCGCGAGGCCGGCC
TGCAATGCTCGCGTCGGTCAACGGCCCTCACTGTCTCGGGGCCGGGTTGCAACAGCAGCA
GCGCGCTACACGTCAGCGCCACTGCCGGCCGCTTTCGCAAATACTCCACGGAGAATCAGT
GACAACAGCATTCTAGCCAGCATTGCAGCTCGGCAAGTGCAGTGGTCCAATGCTGGCTCG
GGTCCAGGCCTGCCCCAGACGGTGCTTCTGCACGTCTCGCATTTGGCGGAGCAGGCAGTT
GAAGTCGCCGAGAAGCCGGTCGTGACGGCAGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002261A_C01 KCC002261A_c01
         (512 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ82688.1| Epa4p [Candida glabrata]                                43  0.003
ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178...    42  0.006
ref|XP_295505.1| hypothetical protein XP_295505 [Homo sapiens]         40  0.017
gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]                       40  0.023
ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas p...    40  0.023

>gb|AAQ82688.1| Epa4p [Candida glabrata]
          Length = 1416

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 30/128 (23%), Positives = 65/128 (50%)
 Frame = +1

Query: 118 SAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNARVGQRPSLSRGRVATA 297
           S++ SS+S   PSP S S +SS SS ++SP   +  S+  + ++      S S    +++
Sbjct: 364 SSSSSSSSSSSPSPSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 423

Query: 298 AARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGSGPGLPQTVLLHVSHLAEQA 477
           ++  +S+P P++ +++    S +S  +S ++     S++ S      +     S  +  +
Sbjct: 424 SSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSPS 483

Query: 478 VEVAEKPV 501
           ++ + KPV
Sbjct: 484 IQPSSKPV 491

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 25/93 (26%), Positives = 46/93 (48%), Gaps = 8/93 (8%)
 Frame = +1

Query: 118 SAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNARVGQRPSLSRGRVATA 297
           S++ SS+S   PSP S S +SS SS ++S    +  S+  + ++     PS S    +++
Sbjct: 420 SSSSSSSSSSSPSPSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSSSPSPSSSSSSSSSS 477

Query: 298 AARYTSA--------PLPAAFANTPRRISDNSI 372
           ++   S         P PA  +N P  ++ +S+
Sbjct: 478 SSSSPSIQPSSKPVDPSPADPSNNPSSVNPSSV 510

>ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178092|gb|EAA06612.2|
           ENSANGP00000004749 [Anopheles gambiae str. PEST]
          Length = 633

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 23/71 (32%), Positives = 35/71 (48%)
 Frame = +1

Query: 115 PSAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNARVGQRPSLSRGRVAT 294
           P AAC++ +     P  RSR++ PS  +A P + + C + P C+A    RP  S     +
Sbjct: 558 PPAACTARA-----PPGRSRSAPPSRSSAGPAVASGCGSPPDCSASCAARPPASPAAPRS 612

Query: 295 AAARYTSAPLP 327
           +A    S P P
Sbjct: 613 SAPPGASRPAP 623

>ref|XP_295505.1| hypothetical protein XP_295505 [Homo sapiens]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 27/73 (36%), Positives = 33/73 (44%)
 Frame = +1

Query: 97  DGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNARVGQRPSLS 276
           D   G PS  CS+    LP+P    RA SPS  A S  L   CS + A   R    PS++
Sbjct: 149 DATRGCPSQVCSAVLSSLPAPTD-GRAESPSITAVSGQLPFWCSRQTALLLRPSPDPSVN 207

Query: 277 RGRVATAAARYTS 315
             R A   +R  S
Sbjct: 208 HSRQAARRSRLLS 220

>gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]
          Length = 1325

 Score = 39.7 bits (91), Expect = 0.023
 Identities = 31/107 (28%), Positives = 52/107 (47%), Gaps = 3/107 (2%)
 Frame = +1

Query: 115 PSAACSSASLQLPSPRSRSRASSPSSRAASPLLQT---PCSARPACNARVGQRPSLSRGR 285
           PSA+ SSAS    S  S S +S+PSS +++P   +   P S+  A +A     PS S   
Sbjct: 671 PSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSA 730

Query: 286 VATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGSGP 426
            + +++   S+   A  A++    S +S   S ++     S++ S P
Sbjct: 731 PSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAP 777

 Score = 38.9 bits (89), Expect = 0.039
 Identities = 34/132 (25%), Positives = 61/132 (45%), Gaps = 3/132 (2%)
 Frame = +1

Query: 76   ACSGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQT---PCSARPACN 246
            A S +    +   PSA+ SSA     S  S S +S+PSS +++P   +   P S+  A +
Sbjct: 995  ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPS 1054

Query: 247  ARVGQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGSGP 426
            A     PS S    +++A   +S+  P++ ++ P   S ++  +S +      S+ G   
Sbjct: 1055 ASSSSAPSSS----SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSFLSGSGSDGGCHS 1110

Query: 427  GLPQTVLLHVSH 462
             +P      V+H
Sbjct: 1111 DVPYYTPTQVAH 1122

 Score = 38.5 bits (88), Expect = 0.050
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
 Frame = +1

Query: 76   ACSGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQT---PCSARPACN 246
            A S +    +   PSA+ SSA     S  S S +S+PSS +++P   +   P S+  A +
Sbjct: 673  ASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPS 732

Query: 247  ARVGQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGSGP 426
            A     PS S    + +++   S+   A  A++    S +S  A  A+     S++ S P
Sbjct: 733  ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAP 792

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 31/115 (26%), Positives = 56/115 (47%)
 Frame = +1

Query: 76   ACSGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNARV 255
            A S +    +   PSA+ SSA     S  S S +S+PSS ++S    +  SA P+ ++  
Sbjct: 949  ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSA-PSSSSSA 1007

Query: 256  GQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGS 420
                S S    +++A   +S+  P++ ++ P   S ++  +S +A     S+A S
Sbjct: 1008 PSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 1062

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 29/115 (25%), Positives = 55/115 (47%)
 Frame = +1

Query: 76   ACSGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNARV 255
            A S +    +   PSA+ SSA     S  S S +S+PSS ++S    +  SA  + ++  
Sbjct: 733  ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAP 792

Query: 256  GQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGS 420
                S +    +++A   +S+  P++ ++ P   S ++  +S +A     S+A S
Sbjct: 793  SASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 847

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
 Frame = +1

Query: 82   SGAIMDGALGRPSAACSSA----SLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNA 249
            S A    +   PSA+ SSA    S   PS  S S  SS SS  ++     P S+  A +A
Sbjct: 920  SSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSA 979

Query: 250  RVGQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGS 420
                 PS S    +++A   +S+  P++ ++ P   S ++  +S +A     S+A S
Sbjct: 980  SSSSAPSSS----SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 1032

 Score = 35.4 bits (80), Expect = 0.43
 Identities = 34/122 (27%), Positives = 58/122 (46%), Gaps = 6/122 (4%)
 Frame = +1

Query: 82   SGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQT---PCSARPACNAR 252
            S A    +   PSA+ SSA     S  S S +S+PSS +++P   +   P S+  A +A 
Sbjct: 982  SSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSAS 1041

Query: 253  VGQRPSLSR---GRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGSG 423
                PS S       +++A   +S+  P+A +++    S ++  AS ++     S+  SG
Sbjct: 1042 SSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSFLSG 1101

Query: 424  PG 429
             G
Sbjct: 1102 SG 1103

 Score = 35.4 bits (80), Expect = 0.43
 Identities = 33/120 (27%), Positives = 58/120 (47%), Gaps = 5/120 (4%)
 Frame = +1

Query: 82   SGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQT---PCSARPACNAR 252
            S A    +   PSA+ SSA     S  S S +S+PSS +++P   +   P S+  A +A 
Sbjct: 797  SSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSAS 856

Query: 253  VGQRPSLSRG--RVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGSGP 426
                PS S      ++++A  +S+  P+A +++    S +S   S ++     S++ S P
Sbjct: 857  SSSAPSSSSSAPSASSSSAPSSSSSAPSA-SSSSAPSSSSSSAPSASSSSAPSSSSSSAP 915

 Score = 34.3 bits (77), Expect = 0.95
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
 Frame = +1

Query: 76   ACSGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQT---PCSARPACN 246
            A S +    +   PSA+ SSA     S  S S +S+PSS +++P   +   P S+  A +
Sbjct: 810  ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPS 869

Query: 247  ARVGQRPSLSRG--RVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGS 420
            A     PS S      ++++A  +S+    + +++    S +S   S ++     S++ S
Sbjct: 870  ASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSS 929

Query: 421  GP 426
             P
Sbjct: 930  AP 931

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
 Frame = +1

Query: 76   ACSGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLL------QTPCSARP 237
            A S +    +   PSA+ SSA     S  S S +S+PSS +++P         +  S+ P
Sbjct: 840  ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAP 899

Query: 238  ACNARVGQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAG 417
            + ++      S S    A++++  +S+   A  A++    S +S  A  A+     S++ 
Sbjct: 900  SASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSS 959

Query: 418  SGP 426
            S P
Sbjct: 960  SAP 962

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 31/116 (26%), Positives = 57/116 (48%), Gaps = 1/116 (0%)
 Frame = +1

Query: 76   ACSGAIMDGALGRPSAACSSA-SLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNAR 252
            A S +    +   PSA+ SSA S    S  S S +S+PSS +++P   +  SA  + ++ 
Sbjct: 748  ASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASS-SSAPSSSSSS 806

Query: 253  VGQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGS 420
                 S S    +++A   +S+  P++ ++ P   S ++  +S +A     S+A S
Sbjct: 807  APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 862

 Score = 32.7 bits (73), Expect = 2.8
 Identities = 33/115 (28%), Positives = 56/115 (48%)
 Frame = +1

Query: 76   ACSGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNARV 255
            A S +    +   PSA+ SSA     S  S S +S+PSS +++P      S+  A ++  
Sbjct: 718  ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAP----SASSSSAPSSSS 773

Query: 256  GQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGS 420
               PS S    ++A +  +SAP  A+ ++ P   S ++  AS ++     S+A S
Sbjct: 774  SSAPSASS---SSAPSSSSSAP-SASSSSAPSSSSSSAPSASSSSAPSSSSSAPS 824

 Score = 32.3 bits (72), Expect = 3.6
 Identities = 28/102 (27%), Positives = 51/102 (49%)
 Frame = +1

Query: 115  PSAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACNARVGQRPSLSRGRVAT 294
            PS++ S+ S    S  S S +S+PS+ ++S     P S+  A +A     PS S     +
Sbjct: 785  PSSSSSAPSASSSSAPSSSSSSAPSASSSS----APSSSSSAPSASSSSAPSSS-----S 835

Query: 295  AAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGS 420
            +A   +S+  P++ ++ P   S ++  +S +A     S+A S
Sbjct: 836  SAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 877

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 36/121 (29%), Positives = 51/121 (41%), Gaps = 6/121 (4%)
 Frame = +1

Query: 82   SGAIMDGALGRPSAACSSA----SLQLPSPRSRSRASSPSSRA--ASPLLQTPCSARPAC 243
            S A    +   PSA+ SSA    S   PS  S S  SS SS A  AS       S+  A 
Sbjct: 888  SSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAP 947

Query: 244  NARVGQRPSLSRGRVATAAARYTSAPLPAAFANTPRRISDNSILASIAARQVQWSNAGSG 423
            +A     PS S    + +++   S+   A  A++    S +S  A  A+     S++ S 
Sbjct: 948  SASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSA 1007

Query: 424  P 426
            P
Sbjct: 1008 P 1008

>ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas putida KT2440]
           gi|24981549|gb|AAN65827.1|AE016211_5 alginate regulatory
           protein AlgP [Pseudomonas putida KT2440]
          Length = 329

 Score = 39.7 bits (91), Expect = 0.023
 Identities = 26/93 (27%), Positives = 46/93 (48%), Gaps = 4/93 (4%)
 Frame = +1

Query: 73  RACSGAIMDGALGRPSAACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACN-- 246
           R  +G  +D    +P+A  ++A+   P+ +  +RA++ +  AA P  +T  +A+PA    
Sbjct: 123 REAAGKALDQRAAKPAAKATAAAK--PAAKPAARATAAAKPAAKPAAKTTTAAKPAAKPA 180

Query: 247 --ARVGQRPSLSRGRVATAAARYTSAPLPAAFA 339
             A    +P+      ATAAA+  + P   A A
Sbjct: 181 AKATAAAKPAAKPAAKATAAAKPAAKPAAKATA 213

 Score = 32.0 bits (71), Expect = 4.7
 Identities = 21/78 (26%), Positives = 40/78 (50%), Gaps = 2/78 (2%)
 Frame = +1

Query: 112 RPSAACSSASLQLPSPRSRSRASS-PSSR-AASPLLQTPCSARPACNARVGQRPSLSRGR 285
           +P+A  ++A+     P +++ A++ P+++ AA        +A+PA  A    +P+     
Sbjct: 178 KPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAA 237

Query: 286 VATAAARYTSAPLPAAFA 339
            ATAAA+  + P   A A
Sbjct: 238 KATAAAKPAAKPAAKAAA 255

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = +1

Query: 103 ALGRPSA--ACSSASLQLPSPRSRSRASSPSSRAASPLLQTPCSARPACN----ARVGQR 264
           A  +P+A  A  + +   P+ +  ++A++ +  AA P  +   +A+PA      A    +
Sbjct: 185 AAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAK 244

Query: 265 PSLSRGRVATAAARYTSAPLPAAFANTP 348
           P+      A AAA+  + P   A A  P
Sbjct: 245 PAAKPAAKAAAAAKPAAKPAAKAPAAKP 272



EST assemble image


clone accession position
1 HCL009d03_r AV640047 1 505
2 LCL020c06_r AV627046 1 355
3 LCL045c07_r AV628662 25 512
4 LCL088e12_r AV631088 36 505




Chlamydomonas reinhardtii
Kazusa DNA Research Institute