KCC002260A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002260A_C01 KCC002260A_c01
ggcggcccgtcatcgccgacttcctggacaagatgacgatttgctcggacgtcaagttca
gcgtcatgcccaatgacaccGCCATCGACGACGCCCTCTACTGCGGCTACTACCAGTCCC
GCTGCAACGGCTCCGCAGTGACCGCCCAGTTCCCGCCGGCCTTCGAGTACCCCTCCGCCG
CCGCCGCCGACGCCGTGGTGACCGTCTACTACAACGCCACCTTCCTCACCGCTGACAGCA
GCGGCAGCGGCCAGGACGCCTACAACCGAGTGCAGCTGCCGCTCAGCGGCGGCGTCATGG
CCTGGTACTCCGGCAAATTTGGTTTCCCCAACCTGCCCAAGCTGCTGGGCATCATGAGTA
TGCCCAAGGTGGCAACCAAGCTCAAGCTGGACTTTTCAAACCTGCTGGGCCCGCTATTCT
ATACCTGGGTGGTGCAGATGCTTCTGCCCACCTTCCTGCAGCAGCTGGTGTACGAGAAGG
AGAAGCGGCTGCGCATGATGATGAAGATGCACGGCCTGGGCGACGGGGCCTACTGGCTCA
TCACCTACCTGTGGTACCTGATGCTGTACGTCATCTACATGATCATTTTCATGGTGTTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002260A_C01 KCC002260A_c01
         (600 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T07713 probable ABC-type transport protein T23J7.70 - Arabi...   116  3e-25
gb|AAM20516.1| ABC-type transport protein-like protein [Arabidop...   114  1e-24
ref|NP_190363.2| ABC transporter family protein [Arabidopsis tha...   114  1e-24
ref|NP_190358.2| ABC transporter family protein [Arabidopsis tha...   114  1e-24
pir||T07717 probable ABC-type transport protein T23J7.110 - Arab...   110  1e-23

>pir||T07713 probable ABC-type transport protein T23J7.70 - Arabidopsis thaliana
           gi|4741191|emb|CAB41857.1| ABC transporter-like protein
           [Arabidopsis thaliana]
          Length = 925

 Score =  116 bits (290), Expect = 3e-25
 Identities = 64/178 (35%), Positives = 101/178 (55%), Gaps = 2/178 (1%)
 Frame = +3

Query: 72  NDTAIDDALYCGYYQSRCNGSAVTAQFPPAFEYPSAAAADAVVTVYYNATFLTADSSGSG 251
           N   ++  L+ GY++   +G  +  +   A++       +  V +++NAT+       + 
Sbjct: 229 NSIEVNLELFEGYHKGNSDG--MINEIVAAYDLFDTNMTNFNVNIWFNATY----KDEAR 282

Query: 252 QDAYNRVQLP-LSGGVMAWYSGKFGFPNLPKLLG-IMSMPKVATKLKLDFSNLLGPLFYT 425
              Y  V++P L   V   Y      P    L   +  MPK  TKL+LD ++L+GP+F+T
Sbjct: 283 NQPYKVVRVPRLVNWVSNAYLQYLQGPRTKMLFEFVKEMPKPETKLRLDIASLIGPIFFT 342

Query: 426 WVVQMLLPTFLQQLVYEKEKRLRMMMKMHGLGDGAYWLITYLWYLMLYVIYMIIFMVF 599
           WV+ +LLP  L  LVYEK++RLR++MKMHGLGDG YW+I+Y ++L L   Y+I  M+F
Sbjct: 343 WVILLLLPVILNSLVYEKQQRLRIIMKMHGLGDGPYWIISYAYFLALSTFYIIFLMIF 400

>gb|AAM20516.1| ABC-type transport protein-like protein [Arabidopsis thaliana]
          Length = 901

 Score =  114 bits (284), Expect = 1e-24
 Identities = 61/172 (35%), Positives = 101/172 (58%)
 Frame = +3

Query: 84  IDDALYCGYYQSRCNGSAVTAQFPPAFEYPSAAAADAVVTVYYNATFLTADSSGSGQDAY 263
           +++ L+ GY +   N      +F  AF++ +    +  V+V+YN+T+   + +     A 
Sbjct: 216 VNNELFKGYRKG--NPDKKINEFAGAFDFQNTNGNNLNVSVWYNSTY--KNDTVVRPMAL 271

Query: 264 NRVQLPLSGGVMAWYSGKFGFPNLPKLLGIMSMPKVATKLKLDFSNLLGPLFYTWVVQML 443
            RV   ++    A+     G         +  MPK  TKL LD ++L+GPLF+TWV+ +L
Sbjct: 272 IRVPRLVNLASNAYLEFLKGSETKILFEYVKEMPKPETKLSLDIASLIGPLFFTWVILLL 331

Query: 444 LPTFLQQLVYEKEKRLRMMMKMHGLGDGAYWLITYLWYLMLYVIYMIIFMVF 599
            P  L  LVYEK++RLR+MMKMHGLGD  YW+++Y ++L++ ++YM+ F +F
Sbjct: 332 FPVILTTLVYEKQQRLRIMMKMHGLGDVPYWIVSYTYFLLISILYMLCFAIF 383

>ref|NP_190363.2| ABC transporter family protein [Arabidopsis thaliana]
          Length = 901

 Score =  114 bits (284), Expect = 1e-24
 Identities = 61/172 (35%), Positives = 101/172 (58%)
 Frame = +3

Query: 84  IDDALYCGYYQSRCNGSAVTAQFPPAFEYPSAAAADAVVTVYYNATFLTADSSGSGQDAY 263
           +++ L+ GY +   N      +F  AF++ +    +  V+V+YN+T+   + +     A 
Sbjct: 216 VNNELFKGYRKG--NPDKKINEFAGAFDFQNTNGNNLNVSVWYNSTY--KNDTVVRPMAL 271

Query: 264 NRVQLPLSGGVMAWYSGKFGFPNLPKLLGIMSMPKVATKLKLDFSNLLGPLFYTWVVQML 443
            RV   ++    A+     G         +  MPK  TKL LD ++L+GPLF+TWV+ +L
Sbjct: 272 IRVPRLVNLASNAYLEFLKGSETKILFEYVKEMPKPETKLSLDIASLIGPLFFTWVILLL 331

Query: 444 LPTFLQQLVYEKEKRLRMMMKMHGLGDGAYWLITYLWYLMLYVIYMIIFMVF 599
            P  L  LVYEK++RLR+MMKMHGLGD  YW+++Y ++L++ ++YM+ F +F
Sbjct: 332 FPVILTTLVYEKQQRLRIMMKMHGLGDVPYWIVSYTYFLLISILYMLCFAIF 383

>ref|NP_190358.2| ABC transporter family protein [Arabidopsis thaliana]
          Length = 947

 Score =  114 bits (284), Expect = 1e-24
 Identities = 65/187 (34%), Positives = 102/187 (53%), Gaps = 11/187 (5%)
 Frame = +3

Query: 72  NDTAIDDALYCGYYQSRCNGSAVTAQFPPAFEYPSAAAADAVVTVYYNATFLTADSSGSG 251
           N   ++  L+ GY++   +G  +  +   A++       +  V +++NAT+       + 
Sbjct: 241 NSIEVNLELFEGYHKGNSDG--MINEIVAAYDLFDTNMTNFNVNIWFNATY----KDEAR 294

Query: 252 QDAYNRVQLPLSGGVMAWYSGKFGFPN--LPKLLG---------IMSMPKVATKLKLDFS 398
              Y  V++P         S K    N  L  L G         +  MPK  TKL+LD +
Sbjct: 295 NQPYKVVRVPRLVNWRLSNSAKMQVSNAYLQYLQGPRTKMLFEFVKEMPKPETKLRLDIA 354

Query: 399 NLLGPLFYTWVVQMLLPTFLQQLVYEKEKRLRMMMKMHGLGDGAYWLITYLWYLMLYVIY 578
           +L+GP+F+TWV+ +LLP  L  LVYEK++RLR++MKMHGLGDG YW+I+Y ++L L   Y
Sbjct: 355 SLIGPIFFTWVILLLLPVILNSLVYEKQQRLRIIMKMHGLGDGPYWIISYAYFLALSTFY 414

Query: 579 MIIFMVF 599
           +I  M+F
Sbjct: 415 IIFLMIF 421

>pir||T07717 probable ABC-type transport protein T23J7.110 - Arabidopsis
           thaliana gi|4741195|emb|CAB41861.1| ABC transporter-like
           protein [Arabidopsis thaliana]
          Length = 900

 Score =  110 bits (276), Expect = 1e-23
 Identities = 59/174 (33%), Positives = 100/174 (56%), Gaps = 2/174 (1%)
 Frame = +3

Query: 84  IDDALYCGYYQSRCNGSAVTAQFPPAFEYPSAAAADAVVTVYYNATFLTADSSGSGQDAY 263
           ++D ++ GY +    G     +   A++  +    +  V ++YN+T+       +G    
Sbjct: 204 VNDKIFKGYKKGNPEGKI--NEIAAAYDLLNTDRNNFNVHIWYNSTY----KDDAGNRLI 257

Query: 264 NRVQLPLSGGVMA-WYSGKFGFPNLPKLLG-IMSMPKVATKLKLDFSNLLGPLFYTWVVQ 437
             +++P S  +++  Y      P    L   +  MPK  T L+LD ++L+GPLF+TWV+ 
Sbjct: 258 KLIRVPRSVNLVSNAYLQFLQGPGTRMLFEYVKEMPKPETSLRLDIASLIGPLFFTWVIL 317

Query: 438 MLLPTFLQQLVYEKEKRLRMMMKMHGLGDGAYWLITYLWYLMLYVIYMIIFMVF 599
           +L P  L  LVYEK++ LR++MKMHGLGDG YW+I+Y ++L + V+Y+I  M+F
Sbjct: 318 LLFPVILSSLVYEKQQHLRIIMKMHGLGDGPYWMISYAYFLTISVLYVICLMIF 371



EST assemble image


clone accession position
1 MXL094f12_r BP098526 1 361
2 HCL009c03_r BP098526 144 600




Chlamydomonas reinhardtii
Kazusa DNA Research Institute