Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002258A_C01 KCC002258A_c01
(216 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_214950.2| similar to RIKEN cDNA 2610034E13 [Rattus norveg... 32 2.7
ref|NP_083641.1| RIKEN cDNA 2610034E13 [Mus musculus] gi|1820394... 32 2.7
ref|XP_352183.1| similar to Serine/Threonine protein kinase [Hom... 31 4.6
ref|NP_031527.1| neurogenic differentiation 4; atonal homolog 3 ... 30 7.9
ref|XP_317117.1| ENSANGP00000019687 [Anopheles gambiae] gi|21300... 30 7.9
>ref|XP_214950.2| similar to RIKEN cDNA 2610034E13 [Rattus norvegicus]
Length = 746
Score = 32.0 bits (71), Expect = 2.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 189 QMRGSAMAHGASWAGQWVVLFGV--WREKPRRRTVGRKTRLQRNIPC 55
Q+ G A+ S + + + GV W+EKP+ +V T+L R++PC
Sbjct: 384 QLGGPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPC 430
>ref|NP_083641.1| RIKEN cDNA 2610034E13 [Mus musculus] gi|18203942|gb|AAH21333.1|
RIKEN cDNA 2610034E13 [Mus musculus]
gi|21410398|gb|AAH31138.1| 2610034E13Rik protein [Mus
musculus]
Length = 745
Score = 32.0 bits (71), Expect = 2.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 189 QMRGSAMAHGASWAGQWVVLFGV--WREKPRRRTVGRKTRLQRNIPC 55
Q+ G A+ S + + + GV W+EKP+ +V T+L R++PC
Sbjct: 383 QLGGPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPC 429
>ref|XP_352183.1| similar to Serine/Threonine protein kinase [Homo sapiens]
Length = 273
Score = 31.2 bits (69), Expect = 4.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 103 SRLLTPHPEQDHPLTSPTGTMRHCTPTHLSYDG 201
S LL PHPE+ TSP HC+ H G
Sbjct: 74 SLLLNPHPEETSLETSPASRYTHCSLAHQHISG 106
>ref|NP_031527.1| neurogenic differentiation 4; atonal homolog 3 (Drosophila) [Mus
musculus] gi|3913116|sp|O09105|NDF4_MOUSE Neurogenic
differentiation factor 4 (NeuroD4) (Atonal protein
homolog 3) (Helix-loop-helix protein mATH-3) (MATH3)
gi|1729425|dbj|BAA12880.1| mammalian atonal homolog-3
[Mus musculus] gi|3123898|gb|AAC15969.1| atonal homolog
3 [Mus musculus] gi|12848771|dbj|BAB28083.1| unnamed
protein product [Mus musculus]
gi|32450735|gb|AAH54391.1| Neurogenic differentiation 4
[Mus musculus]
Length = 330
Score = 30.4 bits (67), Expect = 7.9
Identities = 17/39 (43%), Positives = 20/39 (50%)
Frame = +1
Query: 82 FAPHSTSSRLLTPHPEQDHPLTSPTGTMRHCTPTHLSYD 198
F PH TS+ L + H H TGT R+ P LSYD
Sbjct: 278 FMPHYTSASLSSGHV---HSTPFQTGTPRYDVPVDLSYD 313
>ref|XP_317117.1| ENSANGP00000019687 [Anopheles gambiae] gi|21300164|gb|EAA12309.1|
ENSANGP00000019687 [Anopheles gambiae str. PEST]
Length = 406
Score = 30.4 bits (67), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -3
Query: 97 YCGAQNETAAQHSVHRSVHAGEIVNEC 17
+CGA +T Q +HR VH GE +C
Sbjct: 46 FCGASFKTRGQLKIHRRVHTGEKPYKC 72
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,163,691
Number of Sequences: 1537769
Number of extensions: 4647785
Number of successful extensions: 21951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21935
length of database: 498,525,298
effective HSP length: 47
effective length of database: 426,250,155
effective search space used: 10230003720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
