Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002250A_C01 KCC002250A_c01
(490 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK13109.1|AC080019_1 Hypothetical protein [Oryza sativa] gi|... 40 0.012
emb|CAB95579.1| conserved hypothetical protein [Trypanosoma brucei] 38 0.058
ref|ZP_00057775.1| COG1205: Distinct helicase family with a uniq... 37 0.13
ref|NP_924679.1| unknown protein [Gloeobacter violaceus] gi|3521... 37 0.17
dbj|BAC77302.1| polymerase eta [Gallus gallus] 35 0.64
>gb|AAK13109.1|AC080019_1 Hypothetical protein [Oryza sativa] gi|31431793|gb|AAP53519.1|
hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 367
Score = 40.4 bits (93), Expect = 0.012
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Frame = +1
Query: 97 RVFRAPPDPSRLSIWKATP--------WNGNLSKAPSPASSNTSASQRFTVDARKCFSNA 252
RV RAP D + S+ ATP + N AP+ SS++ AS R + R+ +
Sbjct: 131 RVSRAPADVATTSLGSATPPSTPAAPRFRRNAVAAPASPSSSSPASFRPPIPPRRLVAPL 190
Query: 253 HDRLVRRVAVARR*RRKSAQ*PQFQLCCRR*ARRLLSGMR---RARRLLPRPPPSRSPLP 423
+ L++ + A SAQ P + +L+ R R R L PPPS S L
Sbjct: 191 NHHLLQHRSSAFHAVPSSAQ-PLLPAIIVSSSPFVLADRRPVGRLARRLAAPPPSSSSLR 249
Query: 424 SCNRRSSPCAASASAWR 474
RR P AA+A R
Sbjct: 250 RVPRRPRPRAAAAGCPR 266
>emb|CAB95579.1| conserved hypothetical protein [Trypanosoma brucei]
Length = 1249
Score = 38.1 bits (87), Expect = 0.058
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +3
Query: 297 PKIGAVTSIPVMLPALSPATAFRNAPRSALVAPAAAVSESPAELQSEEQPVRGFGKRLAS 476
P A T +P PA++P A + RSA P A SPA + P RG G A
Sbjct: 396 PAAKATTQVPASAPAVTPTAAAQGRVRSAATTPTATGKTSPARARRRASP-RGAGATAAE 454
Query: 477 VS 482
S
Sbjct: 455 AS 456
>ref|ZP_00057775.1| COG1205: Distinct helicase family with a unique C-terminal domain
including a metal-binding cysteine cluster [Thermobifida
fusca]
Length = 1958
Score = 37.0 bits (84), Expect = 0.13
Identities = 40/151 (26%), Positives = 55/151 (35%), Gaps = 30/151 (19%)
Frame = -2
Query: 477 QTPGACRSRARAAPPIAARQGTPRRRRPGQQAPSAAHS*KQSPGSAPA------T*LELR 316
+TP R R P +AA RR RPG Q P+A H + P +A A +LR
Sbjct: 155 RTPARPGHRGRGGPAVAA---AARRGRPGHQRPAAPHPHRPRPAAARARRTAGGAGAQLR 211
Query: 315 SLRRFSASATSHGDPPHKAVVSI*EAFPGVHGKALTSRCI*ARRRGG------------- 175
+ RR +A P + + + P H + + RR G
Sbjct: 212 ARRRATAGRRRRPARPRRPLRRL-RRTPRPHARGSGQGRVAGRRSGAPGAAGRRQPLPGR 270
Query: 174 -----------LAQVAVPRSRLPDA*SRGVR 115
AQ A+P P+A RGVR
Sbjct: 271 PRPVRGAQQHRAAQGALPGGHRPEADRRGVR 301
>ref|NP_924679.1| unknown protein [Gloeobacter violaceus] gi|35212299|dbj|BAC89674.1|
gll1733 [Gloeobacter violaceus]
Length = 503
Score = 36.6 bits (83), Expect = 0.17
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Frame = +3
Query: 69 TSNTRKSAPASIPSSTGPLSIKHLEGDSLERQPEQGPLSGELKYIC*SALYRGRPEMLLK 248
T + S PA+ PS P + K + + QP GP + P
Sbjct: 57 TPSVSPSKPAATPSPPVPTAAK---SGTRQTQPLPGPA-------------KPGPIQDQP 100
Query: 249 CSRPPCAEGRRGSSLT-PKIG--AVTSIPVMLPALSPATAFRNAPRSALVAPAAAVSESP 419
+ P A + G S T P A T+ P + PA AT +++P A +AP AA SP
Sbjct: 101 LAAPALALPQPGKSPTIPTFSRPASTAKPALAPAKPAATTPQSSP--AGIAPGAAAKPSP 158
Query: 420 AELQSEEQPV 449
A L++E +PV
Sbjct: 159 AMLKAEPKPV 168
>dbj|BAC77302.1| polymerase eta [Gallus gallus]
Length = 673
Score = 34.7 bits (78), Expect = 0.64
Identities = 29/95 (30%), Positives = 42/95 (43%), Gaps = 5/95 (5%)
Frame = +3
Query: 84 KSAPASIPSST-----GPLSIKHLEGDSLERQPEQGPLSGELKYIC*SALYRGRPEMLLK 248
++ P+ +P++T S++H EGDS EQ L +K + G P
Sbjct: 495 QAVPSGLPAATHAHSPAASSMEHPEGDSAGLASEQRELEASVK----QSPRDGSPAS--P 548
Query: 249 CSRPPCAEGRRGSSLTPKIGAVTSIPVMLPALSPA 353
C RPPC E ++ TP + I LP L PA
Sbjct: 549 CKRPPCEELLSDATQTPSTPPSSRI---LPKLKPA 580
