Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002247A_C01 KCC002247A_c01
(572 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ... 44 0.002
emb|CAC03679.1| SRM102 [Arabidopsis thaliana] 40 0.023
ref|NP_180484.2| proline-rich protein -related [Arabidopsis thal... 40 0.023
pir||G84693 probable proline-rich protein [imported] - Arabidops... 40 0.023
ref|NP_294202.1| penicillin-binding protein 1 [Deinococcus radio... 39 0.051
>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
[Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
elegans RSR-1 protein (corresponding sequence F28D9.1)
[Caenorhabditis elegans]
Length = 601
Score = 43.5 bits (101), Expect = 0.002
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Frame = +1
Query: 214 ARATRSPQLTRM-------VRDRHSSQMATRLRQPWVSPSTSGRPIPRLAPIR-KSPMPT 369
AR RSP ++ + R S A R R P S S P R +P + +SP P
Sbjct: 345 ARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPA-PRRRRSPSKSRSPAPK 403
Query: 370 RRMWKLRRCLMLPGRAKRS*PGCPRR---KACACPARRRQRYASRPKAPALRTRQRPKST 540
R + RR P +K P P+R ++ + PA RR+R S+ K+PA R R+ P +
Sbjct: 404 REIPPARR-RRSPSASKS--PPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKS 460
Query: 541 RSARRPSFSP 570
A R SP
Sbjct: 461 PQAPRRRRSP 470
Score = 35.4 bits (80), Expect = 0.56
Identities = 37/123 (30%), Positives = 48/123 (38%), Gaps = 9/123 (7%)
Frame = +1
Query: 214 ARATRSPQLTRM-----VRDRHSSQMATRLRQPWVSPSTSGRPIPRLAPIRKSPMPTRRM 378
AR RSP ++ + R S A R+ S S S P P+ A R P RR
Sbjct: 317 ARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRR 376
Query: 379 WKLRRCLMLPGRAKRS*PG---CPRRKACACPARRRQRYASRPKAPA-LRTRQRPKSTRS 546
P +R P P K PARRR+ ++ PA R + R KS +
Sbjct: 377 RSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPA 436
Query: 547 ARR 555
RR
Sbjct: 437 PRR 439
>emb|CAC03679.1| SRM102 [Arabidopsis thaliana]
Length = 894
Score = 40.0 bits (92), Expect = 0.023
Identities = 42/113 (37%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +1
Query: 226 RSPQLTRMVRDRHSSQMATRLRQPWVSPSTSGRPIPRLAPIR-KSPMPTRRMWKLRRCLM 402
+SP +R R R S A R R P SP R P R +SP P R RR
Sbjct: 318 QSPAPSR--RRRSPSPPARRRRSP--SPPARRRRSPSPPARRHRSPTPPARQ---RRSPS 370
Query: 403 LPGRAKRS*PGCPRRKACACPARRRQRYASRPKAPALRTRQRPKSTRSARRPS 561
P R RS P RR++ + PARRR+ P PA R R R R PS
Sbjct: 371 PPARRHRSPPPARRRRSPSPPARRRR----SPSPPARRRRSPSPLYRRNRSPS 419
>ref|NP_180484.2| proline-rich protein -related [Arabidopsis thaliana]
gi|21928131|gb|AAM78093.1| At2g29210/F16P2.41
[Arabidopsis thaliana] gi|23308459|gb|AAN18199.1|
At2g29210/F16P2.41 [Arabidopsis thaliana]
Length = 878
Score = 40.0 bits (92), Expect = 0.023
Identities = 42/113 (37%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +1
Query: 226 RSPQLTRMVRDRHSSQMATRLRQPWVSPSTSGRPIPRLAPIR-KSPMPTRRMWKLRRCLM 402
+SP +R R R S A R R P SP R P R +SP P R RR
Sbjct: 302 QSPAPSR--RRRSPSPPARRRRSP--SPPARRRRSPSPPARRHRSPTPPARQ---RRSPS 354
Query: 403 LPGRAKRS*PGCPRRKACACPARRRQRYASRPKAPALRTRQRPKSTRSARRPS 561
P R RS P RR++ + PARRR+ P PA R R R R PS
Sbjct: 355 PPARRHRSPPPARRRRSPSPPARRRR----SPSPPARRRRSPSPLYRRNRSPS 403
>pir||G84693 probable proline-rich protein [imported] - Arabidopsis thaliana
gi|3980411|gb|AAC95214.1| putative proline-rich protein
[Arabidopsis thaliana]
Length = 891
Score = 40.0 bits (92), Expect = 0.023
Identities = 42/113 (37%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +1
Query: 226 RSPQLTRMVRDRHSSQMATRLRQPWVSPSTSGRPIPRLAPIR-KSPMPTRRMWKLRRCLM 402
+SP +R R R S A R R P SP R P R +SP P R RR
Sbjct: 315 QSPAPSR--RRRSPSPPARRRRSP--SPPARRRRSPSPPARRHRSPTPPARQ---RRSPS 367
Query: 403 LPGRAKRS*PGCPRRKACACPARRRQRYASRPKAPALRTRQRPKSTRSARRPS 561
P R RS P RR++ + PARRR+ P PA R R R R PS
Sbjct: 368 PPARRHRSPPPARRRRSPSPPARRRR----SPSPPARRRRSPSPLYRRNRSPS 416
>ref|NP_294202.1| penicillin-binding protein 1 [Deinococcus radiodurans]
gi|7473266|pir||B75514 penicillin-binding protein 1 -
Deinococcus radiodurans (strain R1)
gi|6458167|gb|AAF10059.1|AE001907_5 penicillin-binding
protein 1 [Deinococcus radiodurans]
Length = 873
Score = 38.9 bits (89), Expect = 0.051
Identities = 46/141 (32%), Positives = 60/141 (41%), Gaps = 21/141 (14%)
Frame = +1
Query: 211 TARATRSPQLTRMVRDRHSSQMATRLRQPWVSPSTSGRPIPRLAPIRKSPMP--TRRMWK 384
T A RSP R R R + T R+ PS + RP L+P + P P TRR +
Sbjct: 739 TTPAGRSPAPLRR-RTRRTLPRQTSPRR--ALPSRTCRPRRPLSPPPRRPRPGATRRANR 795
Query: 385 LRRCLMLPGRAKRS*PGCPRRKACACPARRR-----------QRYASRPKAPALR---TR 522
R P A R P CPRR+ CPA R + + +R + P LR TR
Sbjct: 796 RRTS---PPSATRC-PTCPRRRLSRCPATPRPLSRRPVTPPGRPFQARRRIPRLRIPPTR 851
Query: 523 QR-----PKSTRSARRPSFSP 570
R P+ R+A P + P
Sbjct: 852 PRLPSPPPRPRRTAPTPGYRP 872
