Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002240A_C01 KCC002240A_c01
(489 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_155342.1| hypothetical protein XP_155342 [Mus musculus] 34 0.83
gb|AAF06353.1|AF199413_1 thymidine kinase [Pseudorabies virus] 33 1.4
ref|XP_295965.1| hypothetical protein XP_295965 [Homo sapiens] 33 1.4
ref|NP_032742.1| Notch gene homolog 3; Notch gene homolog 3, (Dr... 33 1.9
prf||2203365A laminin alpha5 32 4.1
>ref|XP_155342.1| hypothetical protein XP_155342 [Mus musculus]
Length = 171
Score = 34.3 bits (77), Expect = 0.83
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +1
Query: 103 VVLVAAIGRVRRAAQCLYGD*SCTKRATCTLESDLHPRL--APASLGCDI---VFTYAVP 267
+ L GR R Q LY +CT TCT SDLH AP ++ C + + P
Sbjct: 10 IYLYQCRGRHGRVHQLLY---TCTSAVTCTYNSDLHLHQWPAPVTVTCTYNSDLHLHQWP 66
Query: 268 APCP-AATITTDLD 306
AP P T +DL+
Sbjct: 67 APAPVTCTYNSDLN 80
>gb|AAF06353.1|AF199413_1 thymidine kinase [Pseudorabies virus]
Length = 297
Score = 33.5 bits (75), Expect = 1.4
Identities = 30/115 (26%), Positives = 38/115 (32%), Gaps = 3/115 (2%)
Frame = -2
Query: 347 ACEVLCRLALRRHSSRSVVIVAAGQGAGTAYVNTISQPRLAGASLGCKSLSRVQVALFVH 168
AC C + S+R + GA T S A AS S
Sbjct: 176 ACSRACATSTPCWSTRRATLARGAAGATTGGARRASTRPCATASRSTSS----------- 224
Query: 167 D*SPYRH*AARRTRPIAATKT---TEQKSGAPGCAVRFRVSTGAWSVSTEEACNC 12
AAR T P + T + T + S A G R R + G W+ S C C
Sbjct: 225 --------AARATAPSSRTPSSARTRRPSSATGAGARSRCTRGRWTRSWPSCCRC 271
>ref|XP_295965.1| hypothetical protein XP_295965 [Homo sapiens]
Length = 299
Score = 33.5 bits (75), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = +3
Query: 36 HTPCSSAHAKSHSAARRTTLLLSSLGCGNRP 128
HTPC+S+HA SH+ + +L + C N P
Sbjct: 228 HTPCTSSHASSHAKTYTSHVLARVITCKNTP 258
>ref|NP_032742.1| Notch gene homolog 3; Notch gene homolog 3, (Drosophila) [Mus
musculus] gi|2494294|sp|Q61982|NTC3_MOUSE Neurogenic
locus notch homolog protein 3 precursor (Notch 3)
gi|631742|pir||S45306 notch 3 protein - mouse
gi|483581|emb|CAA52776.1| Notch 3 [Mus musculus]
Length = 2318
Score = 33.1 bits (74), Expect = 1.9
Identities = 34/123 (27%), Positives = 48/123 (38%), Gaps = 2/123 (1%)
Frame = +1
Query: 97 CSVVLVAAIGRVRRAAQCLYG--D*SCTKRATCTLESDLHPRLAPASLGCDIVFTYAVPA 270
C +VA G R + +CL G C++ C +H AP S+G D F A P
Sbjct: 94 CQSSVVA--GTARFSCRCLRGFQGPDCSQPDPCVSRPCVHG--APCSVGPDGRFACACPP 149
Query: 271 PCPAATITTDLDECRRRAKRHKTSHAHSPHTGPS*RHPTSKLTCMRQSSSWTCLRGLSYR 450
+ +D+DECR +G + RH TC+ S+ C L Y
Sbjct: 150 GYQGQSCQSDIDECR---------------SGTTCRHGG---TCLNTPGSFRCQCPLGYT 191
Query: 451 ASL 459
L
Sbjct: 192 GLL 194
>prf||2203365A laminin alpha5
Length = 3610
Score = 32.0 bits (71), Expect = 4.1
Identities = 15/32 (46%), Positives = 17/32 (52%), Gaps = 3/32 (9%)
Frame = +2
Query: 389 PN*RVCDSHPLGPACEG---YPIGPHCKRCQP 475
PN D PL AC G + GPHC+RC P
Sbjct: 1896 PNMIFSDCDPLTGACRGCLRHTTGPHCERCAP 1927
