KCC002233A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002233A_C01 KCC002233A_c01
tggcagactggcatcctggtgagagagggaCGCACCGGCACCTGTTCGCCACACCGCCAC
TTGGCATTGAGTTGCCGTTTTGTTGAGTTGAATGCCCAGTTTTGCGATCGAGACGACCGT
TCATAGCATCTCACCACAGCCATGCACCGCGCAATGCGCATACGGAGAGCCCGCAACCAC
GCGCACCTTTTGAGCCTCCCGCGAGAGCCGAGAGCGAGTGAGACACGGGGCATGAGGAAT
GTTTGCATGGATGCACCCTATTGGGGCGGCGTGCCCCGCCACAGGCCACTGGGGGAACGG
CTTTTCGCCGCCTTCAGTATTTTGTGTGGGCGGGGCTTGCGACGTCTGAAAAAGAGGCGT
TTACGGTTGCATGCACCTATTAGCATCAGGGCTCCGGAAGTTGTGGGAGTTGCTGTTGCC
CGTTGGCTGACGGAAGGCTCTTCGGGTGCTGCTCTGCGGCGTGGCTTTTGTACTCTTGGT
AGGACCTGAAGAGACGGCGACGGAGCGTGAGAGAGAAGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002233A_C01 KCC002233A_c01
         (520 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_731761.1| CG7518-PA [Drosophila melanogaster] gi|10726500...    37  0.20
gb|AAM52764.1| SD05989p [Drosophila melanogaster]                      37  0.20
ref|NP_650250.2| CG7518-PB [Drosophila melanogaster] gi|23175967...    37  0.20
sp|Q47077|BGAL_ENTCL BETA-GALACTOSIDASE (LACTASE) gi|1262324|dbj...    35  0.44
prf||2022177A beta galactosidase                                       35  0.44

>ref|NP_731761.1| CG7518-PA [Drosophila melanogaster] gi|10726500|gb|AAF54888.2|
            CG7518-PA [Drosophila melanogaster]
          Length = 2451

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 38/112 (33%), Positives = 48/112 (41%), Gaps = 4/112 (3%)
 Frame = -2

Query: 483  PTKSTKATPQSSTRRAFRQPTGNSNSHNFRSPDANRCMQP*TPLFQTSQAPPTQNTEGGE 304
            PTKS +  P  S+R+  +Q  GN  S+  RS    RC        QT QAP +    G  
Sbjct: 1614 PTKSQQQRPAESSRKQ-KQAPGNLESN--RSAPNQRCEH-----LQTQQAPRSGRVNGRT 1665

Query: 303  KPFP---QWPVAGHAAPIGCIHANIPHAPCLTRSRLSR-EAQKVRVVAGSPY 160
            KP P   Q PV  H+      HA    AP     R  R   QK   ++G P+
Sbjct: 1666 KPTPGGQQQPVQQHSN----AHAAESIAPPKKSQRGKRGHRQKQEDLSGIPH 1713

>gb|AAM52764.1| SD05989p [Drosophila melanogaster]
          Length = 1038

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 38/112 (33%), Positives = 48/112 (41%), Gaps = 4/112 (3%)
 Frame = -2

Query: 483 PTKSTKATPQSSTRRAFRQPTGNSNSHNFRSPDANRCMQP*TPLFQTSQAPPTQNTEGGE 304
           PTKS +  P  S+R+  +Q  GN  S+  RS    RC        QT QAP +    G  
Sbjct: 352 PTKSQQQRPAESSRKQ-KQAPGNLESN--RSAPNQRCEH-----LQTQQAPRSGRVNGRT 403

Query: 303 KPFP---QWPVAGHAAPIGCIHANIPHAPCLTRSRLSR-EAQKVRVVAGSPY 160
           KP P   Q PV  H+      HA    AP     R  R   QK   ++G P+
Sbjct: 404 KPTPGGQQQPVQQHSN----AHAAESIAPPKKSQRGKRGHRQKQEDLSGIPH 451

>ref|NP_650250.2| CG7518-PB [Drosophila melanogaster] gi|23175967|gb|AAN14338.1|
            CG7518-PB [Drosophila melanogaster]
          Length = 2347

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 38/112 (33%), Positives = 48/112 (41%), Gaps = 4/112 (3%)
 Frame = -2

Query: 483  PTKSTKATPQSSTRRAFRQPTGNSNSHNFRSPDANRCMQP*TPLFQTSQAPPTQNTEGGE 304
            PTKS +  P  S+R+  +Q  GN  S+  RS    RC        QT QAP +    G  
Sbjct: 1614 PTKSQQQRPAESSRKQ-KQAPGNLESN--RSAPNQRCEH-----LQTQQAPRSGRVNGRT 1665

Query: 303  KPFP---QWPVAGHAAPIGCIHANIPHAPCLTRSRLSR-EAQKVRVVAGSPY 160
            KP P   Q PV  H+      HA    AP     R  R   QK   ++G P+
Sbjct: 1666 KPTPGGQQQPVQQHSN----AHAAESIAPPKKSQRGKRGHRQKQEDLSGIPH 1713

>sp|Q47077|BGAL_ENTCL BETA-GALACTOSIDASE (LACTASE) gi|1262324|dbj|BAA07673.1|
           beta-galactosidase [Enterobacter cloacae]
          Length = 1028

 Score = 35.4 bits (80), Expect = 0.44
 Identities = 25/79 (31%), Positives = 34/79 (42%), Gaps = 4/79 (5%)
 Frame = -3

Query: 230 PRVSLALGSRGRLK-RCAWLRALRMRIARCMAVVRCYERSSRSQNWAFNSTKRQLNAKWR 54
           P    A GS GR + R   LR  R R A      R  E + R Q W F+     L   WR
Sbjct: 715 PAAIAAAGSSGRFRLRSLLLRQPRRRAAVLTQTDRILEIAHRQQRWQFDRASGNLTQWWR 774

Query: 53  CGEQV---PVRPSLTRMPV 6
            G +    P+  +++R P+
Sbjct: 775 NGVETLLSPLTDNVSRAPL 793

>prf||2022177A beta galactosidase
          Length = 1026

 Score = 35.4 bits (80), Expect = 0.44
 Identities = 25/79 (31%), Positives = 34/79 (42%), Gaps = 4/79 (5%)
 Frame = -3

Query: 230 PRVSLALGSRGRLK-RCAWLRALRMRIARCMAVVRCYERSSRSQNWAFNSTKRQLNAKWR 54
           P    A GS GR + R   LR  R R A      R  E + R Q W F+     L   WR
Sbjct: 714 PAAIAAAGSSGRFRLRSLLLRQPRRRAAVLTQTDRILEIAHRQQRWQFDRASGNLTQWWR 773

Query: 53  CGEQV---PVRPSLTRMPV 6
            G +    P+  +++R P+
Sbjct: 774 NGVETLLSPLTDNVSRAPL 792



EST assemble image


clone accession position
1 HCL050a07_r AV642340 1 520
2 HCL056b08_r AV642694 31 515
3 HCL025g05_r AV640985 57 481
4 HCL006c08_r AV639863 82 482




Chlamydomonas reinhardtii
Kazusa DNA Research Institute