KCC002231A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002231A_C01 KCC002231A_c01
gaacaatggacgtatccGCGCCATTTCCCGCTGCGCCAGCAGCAGAGCCTGCGCAACCGA
GTCCTGCGATTATGACTAGCCCCGCTCCTGTCGTCACCTCGACAGCGCCGACTACATCCT
TGGCACCGCTACCATCTGCAGTAGCTCCATCACTGCCAGCGCCAGCTGCTGTGGCCGCTC
CGGAAGCATCTGCTCCTGCGTCGGTTCGCGAGGACCAGGTCCAAAACGCCGTTGGCTTCC
TATCGCATCCACAGGTCCGCGGCTCCACCAACACCGCCAGCAAGCGCTCTTTCCTGGAGC
GCAAGGGCCTCACAGCGGCCGAGATAGAAGAGGCGTTCCGGCGGGTGCCGGAGGCGCCCG
CCGCCGCGCCCGTGGCCCCCAACGCTGCTGTGGCGCCCGAGCACGCGGAGCAGGCACAGA
CCTCGTACGCGCTACAACCCGGACTGACTCAGCAGCAACAGCAGCAGCAGCAACATGGCG
CA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002231A_C01 KCC002231A_c01
         (482 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_201087.3| (PEX14) protein [Arabidopsis thaliana] gi|10177...    80  1e-14
dbj|BAB17667.1| PEX14 [Arabidopsis thaliana]                           80  1e-14
emb|CAC14740.1| peroxin Pex14 [Arabidopsis thaliana]                   78  5e-14
gb|AAG03093.1|AC073405_9 rice EST D22333 corresponds to a region...    74  9e-13
ref|NP_827199.1| putative dihydrolipoamide S-succinyltransferase...    61  8e-09

>ref|NP_201087.3| (PEX14) protein [Arabidopsis thaliana] gi|10177459|dbj|BAB10850.1|
           gene_id:MQB2.13~unknown protein [Arabidopsis thaliana]
           gi|11094254|dbj|BAB17668.1| AtPex14p [Arabidopsis
           thaliana]
          Length = 507

 Score = 80.5 bits (197), Expect = 1e-14
 Identities = 51/132 (38%), Positives = 71/132 (53%)
 Frame = +3

Query: 45  EPAQPSPAIMTSPAPVVTSTAPTTSLAPLPSAVAPSLPAPAAVAAPEASAPASVREDQVQ 224
           +P    PA+    + +  +T P   +     A  P    P +V   + S P  +REDQ+Q
Sbjct: 8   QPPSDFPALADENSQIPEATKPANEVQQATIAQDP----PTSVF--KNSEP--IREDQIQ 59

Query: 225 NAVGFLSHPQVRGSTNTASKRSFLERKGLTAAEIEEAFRRVPEAPAAAPVAPNAAVAPEH 404
           NA+ FLSHP+VRGS     +RSFLERKGLT  EI+EAFRRVP+ P ++      +   + 
Sbjct: 60  NAIKFLSHPRVRGSP-VIHRRSFLERKGLTKEEIDEAFRRVPDPPPSSQTTVTTSQDGQQ 118

Query: 405 AEQAQTSYALQP 440
           A       A+QP
Sbjct: 119 AVSTVQPQAMQP 130

>dbj|BAB17667.1| PEX14 [Arabidopsis thaliana]
          Length = 507

 Score = 80.5 bits (197), Expect = 1e-14
 Identities = 51/132 (38%), Positives = 71/132 (53%)
 Frame = +3

Query: 45  EPAQPSPAIMTSPAPVVTSTAPTTSLAPLPSAVAPSLPAPAAVAAPEASAPASVREDQVQ 224
           +P    PA+    + +  +T P   +     A  P    P +V   + S P  +REDQ+Q
Sbjct: 8   QPPSDFPALADENSQIPEATKPANEVQQATIAQDP----PTSVF--KNSEP--IREDQIQ 59

Query: 225 NAVGFLSHPQVRGSTNTASKRSFLERKGLTAAEIEEAFRRVPEAPAAAPVAPNAAVAPEH 404
           NA+ FLSHP+VRGS     +RSFLERKGLT  EI+EAFRRVP+ P ++      +   + 
Sbjct: 60  NAIKFLSHPRVRGSP-VIHRRSFLERKGLTKEEIDEAFRRVPDPPPSSQTTVTTSQDGQQ 118

Query: 405 AEQAQTSYALQP 440
           A       A+QP
Sbjct: 119 AVSTVQPQAMQP 130

>emb|CAC14740.1| peroxin Pex14 [Arabidopsis thaliana]
          Length = 507

 Score = 78.2 bits (191), Expect = 5e-14
 Identities = 50/132 (37%), Positives = 70/132 (52%)
 Frame = +3

Query: 45  EPAQPSPAIMTSPAPVVTSTAPTTSLAPLPSAVAPSLPAPAAVAAPEASAPASVREDQVQ 224
           +P    PA+    + +  +T P   +     A  P    P +V   + S P  +REDQ+Q
Sbjct: 8   QPPSDFPALADENSQIPEATKPANEVQQATIAQDP----PTSVF--KNSEP--IREDQIQ 59

Query: 225 NAVGFLSHPQVRGSTNTASKRSFLERKGLTAAEIEEAFRRVPEAPAAAPVAPNAAVAPEH 404
           NA+ FLSHP+VR S     +RSFLERKGLT  EI+EAFRRVP+ P ++      +   + 
Sbjct: 60  NAIKFLSHPKVRSSP-VIHRRSFLERKGLTKEEIDEAFRRVPDPPPSSQTTVTTSQDGQQ 118

Query: 405 AEQAQTSYALQP 440
           A       A+QP
Sbjct: 119 AVSTVQPQAMQP 130

>gb|AAG03093.1|AC073405_9 rice EST D22333 corresponds to a region of the predicated gene;
           unknown protein [Oryza sativa]
          Length = 153

 Score = 73.9 bits (180), Expect = 9e-13
 Identities = 47/88 (53%), Positives = 53/88 (59%)
 Frame = +3

Query: 87  PVVTSTAPTTSLAPLPSAVAPSLPAPAAVAAPEASAPASVREDQVQNAVGFLSHPQVRGS 266
           P+VT T P           A +   PAAVA         VRED VQNAV FLSHP+VRGS
Sbjct: 61  PLVTQTLPPLRRRSSCKQDAAANATPAAVA---------VREDYVQNAVKFLSHPKVRGS 111

Query: 267 TNTASKRSFLERKGLTAAEIEEAFRRVP 350
                +RSFLE+KGLT  EI+EAFRRVP
Sbjct: 112 P-VLYRRSFLEKKGLTKDEIDEAFRRVP 138

>ref|NP_827199.1| putative dihydrolipoamide S-succinyltransferase [Streptomyces
           avermitilis MA-4680] gi|29609685|dbj|BAC73734.1|
           putative dihydrolipoamide S-succinyltransferase
           [Streptomyces avermitilis MA-4680]
          Length = 607

 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 51/142 (35%), Positives = 63/142 (43%), Gaps = 14/142 (9%)
 Frame = +3

Query: 18  APFPAAPAAEPAQPSPAIMTSPAPVVTSTAPTTSLAPLPSAVAPSLPAPAAVAAPEASAP 197
           A  PAAPA  PA P+PA   +PAP   + AP  +    P+A A + PAPAA  AP A AP
Sbjct: 229 AAAPAAPAPAPAAPAPA---APAPAPAAPAPAQAAPAAPAAPAQAAPAPAAPQAPAAPAP 285

Query: 198 ASVREDQVQNAV----GFLSHPQVR----------GSTNTASKRSFLERKGLTAAEIEEA 335
           A V       A     G    P VR           +         + ++ +TAA   EA
Sbjct: 286 APVTPAAAPAATSGDDGAYVTPLVRKLAAENGVDLATVKGTGVGGRIRKQDVTAA--AEA 343

Query: 336 FRRVPEAPAAAPVAPNAAVAPE 401
            +    APAAAP A   A A E
Sbjct: 344 AKAAAPAPAAAPAAAKKAPALE 365

 Score = 39.3 bits (90), Expect = 0.025
 Identities = 38/118 (32%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
 Frame = +3

Query: 45  EPAQPSPAIMTSPAPVVTSTAPTTSLAPLPSAVAPSLPAPAAVA-APEASAPASVREDQV 221
           E A+    +    AP     A     AP P+A AP+ PAPA  A AP A APA       
Sbjct: 199 ETAEVGAKLAVIGAPGAAPAAAPAQAAPAPAA-APAAPAPAPAAPAPAAPAPAPAAPAPA 257

Query: 222 QNAVGFLSHPQVRGSTNTASKRSFLERKGLTAAEIEEAFRRVPEAPAAAPVAPNAAVA 395
           Q A    + P                      A    A  + P APA APV P AA A
Sbjct: 258 QAAPAAPAAP--------------------AQAAPAPAAPQAPAAPAPAPVTPAAAPA 295

 Score = 30.8 bits (68), Expect = 8.8
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -3

Query: 471 AAAAVAAESVRVVARTRSVPAPRARAPQQR--WGPRARRRAPPAPAGTPLLSRPL*GPCA 298
           AA A  A +    A     PAP A AP Q     P A  +A PAPA     + P   P  
Sbjct: 230 AAPAAPAPAPAAPAPAAPAPAPAAPAPAQAAPAAPAAPAQAAPAPAAPQAPAAPAPAPVT 289

Query: 297 P 295
           P
Sbjct: 290 P 290



EST assemble image


clone accession position
1 HCL005h09_r AV639837 1 221
2 HCL089g09_r AV644512 18 482




Chlamydomonas reinhardtii
Kazusa DNA Research Institute