KCC002229A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002229A_C01 KCC002229A_c01
atactacacattcagataacagtCTGTGCTGTTGTTGTAAGTGCGTGCTCCTCCCTGCTC
AATCTTTTGACCAGGACCTGAAGAACCATATACAATAGTCCCTCGACCCACACACGAAGA
GGTTCATAGGGGGCATAAGAAGAGAGGGAAGCATCGCTTTAGTCGGGGGCACGACTCTGA
AGGCGATAGTGCCTCGTTGCCGCTTCCGATGCTGGCGCTCGCGACCAGCGCGGAGGCCTT
TAGAGCCGCTCTAGTGGACCTCCAAGCGCTATGCGGCAACCTACAGAAATACGAATCGGC
CTTCTCGGCGGACGCGAAGGCTCTATACCAGAGTACAAATGCGTCTACGGAGGCGGCCAT
GGCGGAGCTTGAGGCCTTGCCTCCGACTGATGATTCCTCTATTGCTGGATACCTGACGAC
AGGGAACAAGGCGATGGCGCTACGCGCTGTGCTGCAGTCGGTGCAGCAGGCCACATCCAA
CTTCACGTCAGGGGCAAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002229A_C01 KCC002229A_c01
         (498 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB69920.1| ORF1 [TT virus]                                        40  0.016
emb|CAB97476.2| conserved hypothetical protein [Neurospora crassa]     34  0.86
pir||T51023 hypothetical protein B7F21.40 [imported] - Neurospor...    34  0.86
ref|XP_287087.1| hypothetical protein XP_287087 [Mus musculus]         34  0.86
gb|AAF25206.1| EBNA2-like protein [cercopithicine herpesvirus 15...    34  1.1

>dbj|BAB69920.1| ORF1 [TT virus]
          Length = 766

 Score = 40.0 bits (92), Expect = 0.016
 Identities = 25/57 (43%), Positives = 29/57 (50%)
 Frame = +3

Query: 201 RFRCWRSRPARRPLEPL*WTSKRYAATYRNTNRPSRRTRRLYTRVQMRLRRRPWRSL 371
           R R WR    RRP  P+    +R  AT R      RR RR YTR  +R RRRP + L
Sbjct: 17  RRRRWRRLRRRRPRRPV--RRRRRRATVRRRRWRGRRGRRTYTRRAVRRRRRPKKKL 71

>emb|CAB97476.2| conserved hypothetical protein [Neurospora crassa]
          Length = 2592

 Score = 34.3 bits (77), Expect = 0.86
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 470  PAAPTAAQRVAPSPCSLSSGIQQ*RNHQSEARPQAPPWPPP*THLYSGIEPSRP 309
            P  P  AQ +AP+P + S      R+  +  R Q P W PP T    G     P
Sbjct: 1453 PKVPKPAQAIAPTPPAASGKGTNARSRSNSTRVQNPEWMPPKTPAELGARVQNP 1506

>pir||T51023 hypothetical protein B7F21.40 [imported] - Neurospora crassa
          Length = 2649

 Score = 34.3 bits (77), Expect = 0.86
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 470  PAAPTAAQRVAPSPCSLSSGIQQ*RNHQSEARPQAPPWPPP*THLYSGIEPSRP 309
            P  P  AQ +AP+P + S      R+  +  R Q P W PP T    G     P
Sbjct: 1453 PKVPKPAQAIAPTPPAASGKGTNARSRSNSTRVQNPEWMPPKTPAELGARVQNP 1506

>ref|XP_287087.1| hypothetical protein XP_287087 [Mus musculus]
          Length = 93

 Score = 34.3 bits (77), Expect = 0.86
 Identities = 19/48 (39%), Positives = 24/48 (49%)
 Frame = +3

Query: 354 RPWRSLRPCLRLMIPLLLDT*RQGTRRWRYALCCSRCSRPHPTSRQGQ 497
           R W++  P      P L    +Q  RR R ALC +R  R HP SR+ Q
Sbjct: 21  RGWQAGAPWAHASRPQLPTPFKQTPRRTRSALCSARRQRGHPCSREAQ 68

>gb|AAF25206.1| EBNA2-like protein [cercopithicine herpesvirus 15]
           gi|18025470|gb|AAK95414.1| EBNA-2 [cercopithicine
           herpesvirus 15]
          Length = 605

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 20/52 (38%), Positives = 21/52 (39%)
 Frame = -2

Query: 461 PTAAQRVAPSPCSLSSGIQQ*RNHQSEARPQAPPWPPP*THLYSGIEPSRPP 306
           P+   R APS   L    Q        A PQ P  PPP  H  S   P RPP
Sbjct: 179 PSTPPRAAPSYLQLPQEPQTLNPGNHTAHPQTPWMPPPSHHTQSPWAPCRPP 230



EST assemble image


clone accession position
1 HCL009h09_r AV640078 1 273
2 LCL026c11_r AV627409 24 498
3 HCL005f10_r AV639827 31 242




Chlamydomonas reinhardtii
Kazusa DNA Research Institute