KCC002227A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002227A_C01 KCC002227A_c01
cCTCTGCATGGAGCAGAAGTTGCTGGCCCAATTTCCTCAGTGCACGTTACGCAGGGTGCC
AGGCTCGCTGTGCAACACCCGCTTTCAATCGATTATCTACAGGGGTGAAACTGGATCCGC
AAGGTGCTAAAAACGCCGCTAGTTGAGCGTTGTAGTGTGAGTCTCTCACAAGACAGCTCG
CGGTCGTTTGAGAGGTCAACTGCGCCCGGAAATGCTCTCGAAACTGCCAGCACTCTCGGG
CTCGCCCCACGCTTCCAGGTGCCGGAGCACAGGCGCTGTGCAGCCTAGCGGTCGGCAAGC
TGCTATGGCTGCGAGGCCGCTTCAGGGCCCTCGCGCCCTGCTGCCGGTCCCCACGGCGTC
AACTGCCGCGCCACTGCGCGCCACTGCCCAGGCCCCCGCCAGCACCAGCAGCAGCGCCGC
AGATGAGGGCGACGGTCTGGGTGTGATTGCAGTGGACCCAGAGCTGGCCAACTTCAAAGG
CCACCTGGAGTATCGCTGGGCCCAGTACAGGCGCACGCTGGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002227A_C01 KCC002227A_c01
         (523 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83736.1| hypothetical protein [Oryza sativa (japonica cul...    40  0.014
pir||T02041 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) IIa ...    40  0.024
gb|AAK26822.1|AF338432_1 starch branching enzyme IIa variant [Tr...    39  0.031
pir||T06574 probable 1,4-alpha-glucan branching enzyme (EC 2.4.1...    39  0.031
gb|AAG27623.1|AF286319_1 starch branching enzyme 2 [Triticum aes...    39  0.031

>dbj|BAC83736.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 230

 Score = 40.4 bits (93), Expect = 0.014
 Identities = 24/73 (32%), Positives = 28/73 (37%)
 Frame = -1

Query: 418 GAAAGAGGGLGSGAQWRGS*RRGDRQQGARALKRPRSHSSLPTARLHSACAPAPGSVGRA 239
           G     GGG   G +WRGS RRG R+ G R  KR                A   G  GR 
Sbjct: 131 GDGGDGGGGRSGGRRWRGSGRRGRRRSGGRRPKRRGGRGRRGCGEAEGGGAEVGGGPGRR 190

Query: 238 RECWQFREHFRAQ 200
           R     R  +R +
Sbjct: 191 RRRTGARRRWRRE 203

>pir||T02041 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) IIa - maize
           (fragment) gi|2340108|gb|AAB67316.1| starch branching
           enzyme IIa [Zea mays]
          Length = 814

 Score = 39.7 bits (91), Expect = 0.024
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 428 GDGLGVIAVDPELANFKGHLEYRWAQYRR 514
           GDG  +  +DP L  F+GHL+YR+++Y+R
Sbjct: 127 GDGQRIYEIDPMLEGFRGHLDYRYSEYKR 155

>gb|AAK26822.1|AF338432_1 starch branching enzyme IIa variant [Triticum aestivum]
          Length = 768

 Score = 39.3 bits (90), Expect = 0.031
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 428 GDGLGVIAVDPELANFKGHLEYRWAQYRR 514
           GDG  +  +DP L +F+ HL+YR+++YRR
Sbjct: 85  GDGQKIYEIDPTLKDFRSHLDYRYSEYRR 113

>pir||T06574 probable 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) II
           precursor - wheat gi|1885344|emb|CAA72154.1|
           1,4-alpha-glucan branching enzyme II [Triticum aestivum]
          Length = 823

 Score = 39.3 bits (90), Expect = 0.031
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 428 GDGLGVIAVDPELANFKGHLEYRWAQYRR 514
           GDG  +  +DP L +F+ HL+YR+++YRR
Sbjct: 140 GDGQKIYEIDPTLKDFRSHLDYRYSEYRR 168

>gb|AAG27623.1|AF286319_1 starch branching enzyme 2 [Triticum aestivum]
          Length = 823

 Score = 39.3 bits (90), Expect = 0.031
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 428 GDGLGVIAVDPELANFKGHLEYRWAQYRR 514
           GDG  +  +DP L +F+ HL+YR+++YRR
Sbjct: 140 GDGQKIYEIDPTLKDFRSHLDYRYSEYRR 168



EST assemble image


clone accession position
1 LCL047a06_r AV628783 1 453
2 LCL021c09_r AV627113 2 171
3 MXL041e01_r BP095417 23 466
4 HCL005e01_r AV639816 35 453
5 LCL004d03_r AV626211 36 288
6 HCL049e06_r AV642310 101 523




Chlamydomonas reinhardtii
Kazusa DNA Research Institute