KCC002224A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002224A_C01 KCC002224A_c01
acgtgttagacgtgtatatacagtagcctcgcgacCGCAACACCTTTCTGGAGCAACACC
CAGCCTTGCATCGCAGCCTTACGACCTCCTCCCAACCCCTGCGCTGCTGAAATTTATCCA
TGATGAGGTCATTCGCATGTAACCAGAAGTGCTCCAGGACAGCAAACGCGCCCAGGGCGT
TCACGCTTGCGTCCCCATCGGCGCCAGCGCCGTTCGTTGTCCGTCGGAGGGTCGCGCTGG
TAGTGAGGAATGACGCTGGCGCATCGACAAAGCCCACCCTGTCTATCAAGATGCCCTACC
GCGTGAACTTTGGCGAGACGCTTCGGCTGGTCGGTTCGAGCCCGCTGCTGGGCGACTGGA
ATGCCGACAAGGGTCTACAGCTTGAATGGAGCGAAGGCGACGTTTGGTGCGCGGACGTGC
CTATCGACGCGGGGCACTATGAGTTCAAGTGTGTAATCTACAATGCGCAGAGCAACCAGG
TGTCCCGCTGGGAGGACGGCGGCAACCGCGTGCTCAACATCACCGAGGAGCCGGGCGCGT
GGGCGGTGGACTGCCTGTGGGGCGCCACCACCGACAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002224A_C01 KCC002224A_c01
         (577 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T01856 hypothetical protein F9D12.19 - Arabidopsis thaliana...    64  2e-09
ref|NP_198009.1| expressed protein [Arabidopsis thaliana]              64  2e-09
pir||T45966 hypothetical protein F7J8.240 - Arabidopsis thaliana...    52  8e-06
emb|CAB42581.1| putative degreening-enhanced protein [Auxenochlo...    52  8e-06
ref|NP_568087.1| expressed protein [Arabidopsis thaliana] gi|163...    52  8e-06

>pir||T01856 hypothetical protein F9D12.19 - Arabidopsis thaliana
           gi|3319356|gb|AAC26245.1| contains similarity glycosyl
           hydrolases [Arabidopsis thaliana]
          Length = 491

 Score = 63.5 bits (153), Expect = 2e-09
 Identities = 37/107 (34%), Positives = 60/107 (55%), Gaps = 1/107 (0%)
 Frame = +3

Query: 258 GASTKPTLSIKMPYRVNFGETLRLVGSSPLLGDWNADKGLQLEWSEGDVWCADVPIDAGH 437
           G+ TK  L++++ ++VNFG+ + + GS+  +G W   K   L WSE   W  ++ +D G 
Sbjct: 69  GSGTKVRLNVRLDHQVNFGDHVAMFGSAKEIGSWK--KKSPLNWSENG-WVCELELDGGQ 125

Query: 438 -YEFKCVIYNAQSNQVSRWEDGGNRVLNITEEPGAWAVDCLWGATTD 575
             E+K VI   +++    WE G NRVL +    G ++V C W AT +
Sbjct: 126 VLEYKFVI--VKNDGSLSWESGDNRVLKVPNS-GNFSVVCHWDATRE 169

>ref|NP_198009.1| expressed protein [Arabidopsis thaliana]
          Length = 1186

 Score = 63.5 bits (153), Expect = 2e-09
 Identities = 37/107 (34%), Positives = 60/107 (55%), Gaps = 1/107 (0%)
 Frame = +3

Query: 258 GASTKPTLSIKMPYRVNFGETLRLVGSSPLLGDWNADKGLQLEWSEGDVWCADVPIDAGH 437
           G+ TK  L++++ ++VNFG+ + + GS+  +G W   K   L WSE   W  ++ +D G 
Sbjct: 69  GSGTKVRLNVRLDHQVNFGDHVAMFGSAKEIGSWK--KKSPLNWSENG-WVCELELDGGQ 125

Query: 438 -YEFKCVIYNAQSNQVSRWEDGGNRVLNITEEPGAWAVDCLWGATTD 575
             E+K VI   +++    WE G NRVL +    G ++V C W AT +
Sbjct: 126 VLEYKFVI--VKNDGSLSWESGDNRVLKVPNS-GNFSVVCHWDATRE 169

>pir||T45966 hypothetical protein F7J8.240 - Arabidopsis thaliana
           gi|6759449|emb|CAB69854.1| putative protein [Arabidopsis
           thaliana]
          Length = 385

 Score = 51.6 bits (122), Expect = 8e-06
 Identities = 28/75 (37%), Positives = 42/75 (55%), Gaps = 2/75 (2%)
 Frame = +3

Query: 309 FGETLRLVGSSPLLGD-WNADKGLQLEWSEGDVWCADVPIDAGH-YEFKCVIYNAQSNQV 482
           FGE   +VG  P+ G  W+ +  L L WS+G+VW  D+ +  G   EFK ++  AQ+ ++
Sbjct: 99  FGEHFFIVGDDPVFGGLWDPETALPLNWSDGNVWTVDLDLPVGRLVEFK-LLLKAQTGEI 157

Query: 483 SRWEDGGNRVLNITE 527
             W+ G NR L   E
Sbjct: 158 -LWQPGPNRALETWE 171

>emb|CAB42581.1| putative degreening-enhanced protein [Auxenochlorella
           protothecoides]
          Length = 214

 Score = 51.6 bits (122), Expect = 8e-06
 Identities = 31/97 (31%), Positives = 48/97 (48%), Gaps = 1/97 (1%)
 Frame = +3

Query: 261 ASTKPTLSIKMPYRVNFGETLRLVGSSPLLGDWNADKGLQLEWSEGDVWCADVPIDAG-H 437
           A+ K  +  ++P RV+FG+T+ +V S      W     L ++WSEGD W     +  G  
Sbjct: 18  AAGKAKVQFRLPKRVSFGQTISIVTSR---SGWEPIPDLHMDWSEGDEWKVSAEVAPGDE 74

Query: 438 YEFKCVIYNAQSNQVSRWEDGGNRVLNITEEPGAWAV 548
            E+K V+       +  W+ G NR L + + PG  AV
Sbjct: 75  LEYKYVVLGPSG--IVEWQTGSNRRLAV-DVPGGAAV 108

>ref|NP_568087.1| expressed protein [Arabidopsis thaliana] gi|16323041|gb|AAL15255.1|
           AT5g01260/F7J8_240 [Arabidopsis thaliana]
           gi|23505873|gb|AAN28796.1| At5g01260/F7J8_240
           [Arabidopsis thaliana]
          Length = 306

 Score = 51.6 bits (122), Expect = 8e-06
 Identities = 28/75 (37%), Positives = 42/75 (55%), Gaps = 2/75 (2%)
 Frame = +3

Query: 309 FGETLRLVGSSPLLGD-WNADKGLQLEWSEGDVWCADVPIDAGH-YEFKCVIYNAQSNQV 482
           FGE   +VG  P+ G  W+ +  L L WS+G+VW  D+ +  G   EFK ++  AQ+ ++
Sbjct: 99  FGEHFFIVGDDPVFGGLWDPETALPLNWSDGNVWTVDLDLPVGRLVEFK-LLLKAQTGEI 157

Query: 483 SRWEDGGNRVLNITE 527
             W+ G NR L   E
Sbjct: 158 -LWQPGPNRALETWE 171



EST assemble image


clone accession position
1 LCL047b11_r AV628793 1 429
2 HCL021e03_r AV640732 36 470
3 HCL005b02_r AV639792 72 467
4 HCL039f08_r AV641743 163 577




Chlamydomonas reinhardtii
Kazusa DNA Research Institute