KCC002219A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002219A_C01 KCC002219A_c01
agTTGGCGCGTTTAGAAGACCGCAGCCAAAATGCAGCTGAACGTCGCGCACCACTATTGC
GAGTCCATCAACAAGACTATCCGTCGCCCCACGCGCACGGTCATGATCGGCAAGGTGCCG
GTGGGCAGCCAGCACCGCATCGCCCTTCAGACCATGACCACCACGGACACCCGCAATGTG
CAGCTGACCGTGGACCAGGTGAAGAAGTGCGCGGACGCCGGCGCGGACATCGTCCGCATC
ACAGTGCAGGGCAAGAAGGAGGCTGAGGCGTGCATGAAGATTCGCGAGCAGCTGTTCAAG
GACAAGTACGACGTGCCCCTGGTGGCCGACATCCACTTCCAGCCCACGGTGGCCATGATG
GTGGCGGACGCCTTCGAGAAGATCCGTGTGAACCCCGGCAACTTCGCTGACGGCCGCAAG
ACCTTCGACGTCATCAACTACGATGACCCCCGGGAGTTTGAGCGCGAGCGCGAGCTGATT
GAGGAGACCTTCACGCCGCTGGTGCTCAAGTGCAAGGAGCTGGGCCGCGCCATCCGCATC
G


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002219A_C01 KCC002219A_c01
         (541 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL91150.1| GcpE protein [Arabidopsis thaliana] gi|34365569|g...   207  5e-53
ref|NP_200868.2| GcpE protein; nuclear gene for chloroplast prod...   207  7e-53
dbj|BAB09833.1| GcpE protein [Arabidopsis thaliana]                   207  7e-53
ref|NP_851233.1| GcpE protein; nuclear gene for chloroplast prod...   207  7e-53
gb|AAM19840.1| AT5g60600/mup24_10 [Arabidopsis thaliana]              207  9e-53

>gb|AAL91150.1| GcpE protein [Arabidopsis thaliana] gi|34365569|gb|AAQ65096.1|
           At5g60600 [Arabidopsis thaliana]
          Length = 741

 Score =  207 bits (528), Expect = 5e-53
 Identities = 99/162 (61%), Positives = 133/162 (81%)
 Frame = +1

Query: 55  YCESINKTIRRPTRTVMIGKVPVGSQHRIALQTMTTTDTRNVQLTVDQVKKCADAGADIV 234
           YCES++KT+RR TRTVM+G V +GS+H I +QTMTT+DT+++  TVD+V + AD GADIV
Sbjct: 75  YCESLHKTVRRKTRTVMVGNVALGSEHPIGIQTMTTSDTKDITGTVDEVMRIADKGADIV 134

Query: 235 RITVQGKKEAEACMKIREQLFKDKYDVPLVADIHFQPTVAMMVADAFEKIRVNPGNFADG 414
           RITVQGKKEA+AC +I+++L +  Y++PLVADIHF PTVA+ VA+ F+KIRVNPGNFAD 
Sbjct: 135 RITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADR 194

Query: 415 RKTFDVINYDDPREFERERELIEETFTPLVLKCKELGRAIRI 540
           R  F+ I+Y +  E+++E + IE+ FTPLV KCK+ GRA+RI
Sbjct: 195 RAQFETIDYTED-EYQKELQHIEQVFTPLVEKCKKYGRAMRI 235

>ref|NP_200868.2| GcpE protein; nuclear gene for chloroplast product [Arabidopsis
           thaliana] gi|27462472|gb|AAO15446.1|AF434673_1 GcpE
           [Arabidopsis thaliana]
          Length = 740

 Score =  207 bits (527), Expect = 7e-53
 Identities = 99/162 (61%), Positives = 133/162 (81%)
 Frame = +1

Query: 55  YCESINKTIRRPTRTVMIGKVPVGSQHRIALQTMTTTDTRNVQLTVDQVKKCADAGADIV 234
           YCES++KT+RR TRTVM+G V +GS+H I +QTMTT+DT+++  TVD+V + AD GADIV
Sbjct: 75  YCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTVDEVMRIADKGADIV 134

Query: 235 RITVQGKKEAEACMKIREQLFKDKYDVPLVADIHFQPTVAMMVADAFEKIRVNPGNFADG 414
           RITVQGKKEA+AC +I+++L +  Y++PLVADIHF PTVA+ VA+ F+KIRVNPGNFAD 
Sbjct: 135 RITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADR 194

Query: 415 RKTFDVINYDDPREFERERELIEETFTPLVLKCKELGRAIRI 540
           R  F+ I+Y +  E+++E + IE+ FTPLV KCK+ GRA+RI
Sbjct: 195 RAQFETIDYTED-EYQKELQHIEQVFTPLVEKCKKYGRAMRI 235

>dbj|BAB09833.1| GcpE protein [Arabidopsis thaliana]
          Length = 716

 Score =  207 bits (527), Expect = 7e-53
 Identities = 99/162 (61%), Positives = 133/162 (81%)
 Frame = +1

Query: 55  YCESINKTIRRPTRTVMIGKVPVGSQHRIALQTMTTTDTRNVQLTVDQVKKCADAGADIV 234
           YCES++KT+RR TRTVM+G V +GS+H I +QTMTT+DT+++  TVD+V + AD GADIV
Sbjct: 50  YCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTVDEVMRIADKGADIV 109

Query: 235 RITVQGKKEAEACMKIREQLFKDKYDVPLVADIHFQPTVAMMVADAFEKIRVNPGNFADG 414
           RITVQGKKEA+AC +I+++L +  Y++PLVADIHF PTVA+ VA+ F+KIRVNPGNFAD 
Sbjct: 110 RITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADR 169

Query: 415 RKTFDVINYDDPREFERERELIEETFTPLVLKCKELGRAIRI 540
           R  F+ I+Y +  E+++E + IE+ FTPLV KCK+ GRA+RI
Sbjct: 170 RAQFETIDYTED-EYQKELQHIEQVFTPLVEKCKKYGRAMRI 210

>ref|NP_851233.1| GcpE protein; nuclear gene for chloroplast product [Arabidopsis
           thaliana]
          Length = 741

 Score =  207 bits (527), Expect = 7e-53
 Identities = 99/162 (61%), Positives = 133/162 (81%)
 Frame = +1

Query: 55  YCESINKTIRRPTRTVMIGKVPVGSQHRIALQTMTTTDTRNVQLTVDQVKKCADAGADIV 234
           YCES++KT+RR TRTVM+G V +GS+H I +QTMTT+DT+++  TVD+V + AD GADIV
Sbjct: 75  YCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTVDEVMRIADKGADIV 134

Query: 235 RITVQGKKEAEACMKIREQLFKDKYDVPLVADIHFQPTVAMMVADAFEKIRVNPGNFADG 414
           RITVQGKKEA+AC +I+++L +  Y++PLVADIHF PTVA+ VA+ F+KIRVNPGNFAD 
Sbjct: 135 RITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADR 194

Query: 415 RKTFDVINYDDPREFERERELIEETFTPLVLKCKELGRAIRI 540
           R  F+ I+Y +  E+++E + IE+ FTPLV KCK+ GRA+RI
Sbjct: 195 RAQFETIDYTED-EYQKELQHIEQVFTPLVEKCKKYGRAMRI 235

>gb|AAM19840.1| AT5g60600/mup24_10 [Arabidopsis thaliana]
          Length = 741

 Score =  207 bits (526), Expect = 9e-53
 Identities = 99/162 (61%), Positives = 133/162 (81%)
 Frame = +1

Query: 55  YCESINKTIRRPTRTVMIGKVPVGSQHRIALQTMTTTDTRNVQLTVDQVKKCADAGADIV 234
           YCES++KT+RR TRTVM+G V +GS+H I +QTMTT+DT+++  TVD+V + AD GADIV
Sbjct: 75  YCESLHKTVRRKTRTVMVGDVALGSEHPIRIQTMTTSDTKDITGTVDEVMRIADKGADIV 134

Query: 235 RITVQGKKEAEACMKIREQLFKDKYDVPLVADIHFQPTVAMMVADAFEKIRVNPGNFADG 414
           RITVQGKKEA+AC +I+++L +  Y++PLVADIHF PTVA+ VA+ F+KIRVNPGNFAD 
Sbjct: 135 RITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADR 194

Query: 415 RKTFDVINYDDPREFERERELIEETFTPLVLKCKELGRAIRI 540
           R  F+ I+Y +  E+++E + IE+ FTPLV KCK+ GRA+RI
Sbjct: 195 RAQFETIDYTED-EYQKELQHIEQVFTPLVEKCKKYGRAMRI 235



EST assemble image


clone accession position
1 LCL015e03_r AV626792 1 479
2 LCL035f07_r AV628026 3 513
3 HCL089b10_r AV644476 13 541
4 HCL032d09_r AV641368 14 382
5 HCL060b04_r AV642898 14 492
6 HCL016b07_r AV640429 14 311
7 HCL080a02_r AV644003 14 458
8 HCL004e11_r AV639761 14 130
9 HCL081e11_r AV644087 14 541
10 LCL016e04_r AV626844 15 533
11 LCL058f01_r AV629427 17 472




Chlamydomonas reinhardtii
Kazusa DNA Research Institute