KCC002217A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002217A_C01 KCC002217A_c01
TTGCTCCGTAGCAAGCTCGGGCTTCAAACAGCGCGAAGCAATATGTGCAGGCCTACCTGA
TTCCGACTCGGGGCCAGCCCGTGCCCAGGTATCCCGCACCAGTATTGGATCATCCATGGT
GCAACTTACGACCTGGCCAGCTATATCAAGTCGCACCCAGGCGGCGACGAGGCCATCCTG
CTAGGACGGGGCCGCGACTGCACTGAGCTCTTCGAGCAGTACCATGTGCTTAACAACAAG
CACTTGCGTGTGCTGGAGCGGTTCCGCGTCACTCTGCCGGCGGCTAAGGTGGCGACCAAC
AACCTGAAGGAGGACATGGTGTCGACCATCAGCGCGTTCGAGGGCGAGGAGGCGGACGCA
GCGGCCGTGGTGGGCATCCAGCAGCCTGCTGCACCCGCCCGCGTTGCGCACCAGTCGGAT
CCCTTTTACGAGGACATCAAGGCAATGGTTCGCGCTCACGGCAACACCAAAATGTCCGCT
CCGTTTGTGATCCTCCACTGCCTGCACGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002217A_C01 KCC002217A_c01
         (509 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P43101|NIA_CICIN Nitrate reductase [NADH] (NR) gi|1086084|pir...    58  6e-08
sp|P11605|NIA1_TOBAC Nitrate reductase [NADH] 1 (NR1) gi|19889|e...    57  1e-07
pir||RDNTNT nitrate reductase (NADH) (EC 1.7.1.1) nia-1 - common...    57  1e-07
dbj|BAA37090.1| delta 5 fatty acid desaturase [Dictyostelium dis...    57  1e-07
gb|AAD19790.1| nitrate reductase [Glycine max]                         57  1e-07

>sp|P43101|NIA_CICIN Nitrate reductase [NADH] (NR) gi|1086084|pir||S52301 nitrate
           reductase (NADH) (EC 1.7.1.1) - chicory
           gi|662902|emb|CAA58909.1| nitrate reductase (NADH)
           [Cichorium intybus]
          Length = 920

 Score = 58.2 bits (139), Expect = 6e-08
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = +1

Query: 109 IIHGATYDLASYIKSHPGGDEAILLGRGRDCTELFEQYHVLNNKHLRVLERFRV 270
           ++HG  YD  S++K HPGG ++ILL  G DCTE F+  H  ++K  ++LE +RV
Sbjct: 554 VVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEFDAIH--SDKAKKLLEEYRV 605

>sp|P11605|NIA1_TOBAC Nitrate reductase [NADH] 1 (NR1) gi|19889|emb|CAA32216.1| nitrate
           reductase [Nicotiana tabacum]
          Length = 904

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 32/95 (33%), Positives = 50/95 (51%)
 Frame = +1

Query: 109 IIHGATYDLASYIKSHPGGDEAILLGRGRDCTELFEQYHVLNNKHLRVLERFRVTLPAAK 288
           I+HG  YD   ++K HPGG ++IL+  G DCTE F+  H  ++K  ++LE FR+      
Sbjct: 551 IVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEFDAIH--SDKAKKLLEEFRIGELLTT 608

Query: 289 VATNNLKEDMVSTISAFEGEEADAAAVVGIQQPAA 393
             T++   + V   S+F    A    +V  Q+  A
Sbjct: 609 GYTSDSPGNSVHGSSSFSSFLAPIKELVPAQRSVA 643

>pir||RDNTNT nitrate reductase (NADH) (EC 1.7.1.1) nia-1 - common tobacco
           gi|227925|prf||1713435A nitrate reductase
          Length = 904

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 32/95 (33%), Positives = 50/95 (51%)
 Frame = +1

Query: 109 IIHGATYDLASYIKSHPGGDEAILLGRGRDCTELFEQYHVLNNKHLRVLERFRVTLPAAK 288
           I+HG  YD   ++K HPGG ++IL+  G DCTE F+  H  ++K  ++LE FR+      
Sbjct: 551 IVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEFDAIH--SDKAKKLLEEFRIGELLTT 608

Query: 289 VATNNLKEDMVSTISAFEGEEADAAAVVGIQQPAA 393
             T++   + V   S+F    A    +V  Q+  A
Sbjct: 609 GYTSDSPGNSVHGSSSFSSFLAPIKELVPAQRSVA 643

>dbj|BAA37090.1| delta 5 fatty acid desaturase [Dictyostelium discoideum]
          Length = 467

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 36/54 (66%)
 Frame = +1

Query: 109 IIHGATYDLASYIKSHPGGDEAILLGRGRDCTELFEQYHVLNNKHLRVLERFRV 270
           I+ G  Y++  ++  HPGG++ +LL  GRD T LFE YH + +KH  +++++ +
Sbjct: 32  IVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMTDKHYSLIKQYEI 85

>gb|AAD19790.1| nitrate reductase [Glycine max]
          Length = 890

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 32/98 (32%), Positives = 52/98 (52%)
 Frame = +1

Query: 109 IIHGATYDLASYIKSHPGGDEAILLGRGRDCTELFEQYHVLNNKHLRVLERFRVTLPAAK 288
           I+HG  YD   ++K HPGG ++IL+  G DCTE FE  H  ++K  ++LE +R+     +
Sbjct: 537 IVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAIH--SDKAKQMLEDYRI----GE 590

Query: 289 VATNNLKEDMVSTISAFEGEEADAAAVVGIQQPAAPAR 402
           + T     D  S+  +  G  +D   +  I++   P R
Sbjct: 591 LTTTCYNSDSSSSNPSVHG-SSDTIPLTPIKEVITPMR 627



EST assemble image


clone accession position
1 HCL083a03_r AV644153 1 607
2 HCL057a07_r AV642737 52 374
3 HCL004c09_r AV639747 52 257
4 LCL090e02_r AV631221 54 475
5 MXL053b06_r BP096125 56 453
6 HCL084b07_r AV644215 56 539
7 HCL009d04_r AV640048 56 341
8 LCL039h02_r AV628307 56 438
9 HCL019f08_r AV640641 57 328
10 HCL037h10_r AV641641 59 438
11 MXL025f11_r BP094614 64 510
12 LCL007g01_r AV626357 66 327
13 HCL058f01_r AV626357 75 443
14 MXL006e01_r BP093304 109 557
15 LCL090f10_r AV631237 184 539




Chlamydomonas reinhardtii
Kazusa DNA Research Institute