KCC002216A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002216A_C01 KCC002216A_c01
tatatCTTGATATCTAGGAGCACAAGCACTCGTTCACGCCTCAATCAACCACTAGATACC
CAGTCTTTGCGTCAATGCTGACTTAATCTGCCGTTTCTGGCCATAGATATTTCAAAGGCA
GTCATGCGTGGGAGCGAGTTTGTTGAGTCTGAGGAGATTGCTGTCGCTGCCAGCCGCAAC
GCACCGCTCAGGCGCAGGCGCCGCGCAGCACCTAGCAGTTCGCAGACGCCTACGCTCGCA
TTCCAGGAGCTACCGGATTACCTTCAAGACAATGAGTTTATTCAGAAATACTACAGGACT
CCGGATATGCCCTTGAAACGAACGCTCTGGTCGCTCTTTGATATACACAACGAGACCGGG
AATGTGTGGACGCACCTGCTGGGCTTCCTGATGTTCCTGGGCCTGACGTTCTATGTCATC
AAGCTGCCGCCGCAGCCGCTGGCGATGGGCAAGCACCAGCTGGACACGCTGTGGCACTCG
GTCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002216A_C01 KCC002216A_c01
         (484 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM19133.1|AC103891_13 Hypothetical protein [Oryza sativa (ja...    75  3e-13
ref|NP_195545.1| expressed protein [Arabidopsis thaliana] gi|748...    75  5e-13
ref|NP_195483.1| expressed protein [Arabidopsis thaliana] gi|748...    75  5e-13
ref|NP_197527.1| expressed protein [Arabidopsis thaliana] gi|159...    70  2e-11
ref|XP_313784.1| ENSANGP00000012224 [Anopheles gambiae] gi|30176...    69  4e-11

>gb|AAM19133.1|AC103891_13 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 822

 Score = 75.5 bits (184), Expect = 3e-13
 Identities = 43/105 (40%), Positives = 56/105 (52%)
 Frame = +1

Query: 118 AVMRGSEFVESEEIAVAASRNAPLRRRRRAAPSSSQTPTLAFQELPDYLQDNEFIQKYYR 297
           A   G E   +        R   LRRRRR          + ++ LP Y++DNE+I ++YR
Sbjct: 2   AAAAGEEVEAARWAEAEDERKEGLRRRRRYG-------LVEYRALPGYMRDNEYILRHYR 54

Query: 298 TPDMPLKRTLWSLFDIHNETGNVWTHLLGFLMFLGLTFYVIKLPP 432
             + PL + L S F IHNET NVWTHL+GF +FL LT Y     P
Sbjct: 55  C-EWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQVP 98

>ref|NP_195545.1| expressed protein [Arabidopsis thaliana] gi|7485963|pir||T05660
           hypothetical protein F22I13.90 - Arabidopsis thaliana
           gi|4539340|emb|CAB37488.1| putative protein [Arabidopsis
           thaliana] gi|7270816|emb|CAB80497.1| putative protein
           [Arabidopsis thaliana] gi|17979369|gb|AAL49910.1|
           unknown protein [Arabidopsis thaliana]
           gi|20465579|gb|AAM20272.1| unknown protein [Arabidopsis
           thaliana]
          Length = 374

 Score = 74.7 bits (182), Expect = 5e-13
 Identities = 35/64 (54%), Positives = 45/64 (69%)
 Frame = +1

Query: 241 FQELPDYLQDNEFIQKYYRTPDMPLKRTLWSLFDIHNETGNVWTHLLGFLMFLGLTFYVI 420
           F  LP YL+DNE+I  +YR+ + P+K+ L S+F IHNET NVWTHL+GF +FL LT Y  
Sbjct: 42  FHSLPAYLRDNEYIIGHYRS-EWPIKQILLSIFTIHNETLNVWTHLIGFFLFLALTIYTA 100

Query: 421 KLPP 432
              P
Sbjct: 101 TKVP 104

>ref|NP_195483.1| expressed protein [Arabidopsis thaliana] gi|7485770|pir||T04725
           hypothetical protein F19F18.170 - Arabidopsis thaliana
           gi|4468993|emb|CAB38307.1| putative protein [Arabidopsis
           thaliana] gi|7270750|emb|CAB80433.1| putative protein
           [Arabidopsis thaliana]
           gi|13430522|gb|AAK25883.1|AF360173_1 unknown protein
           [Arabidopsis thaliana] gi|15810619|gb|AAL07197.1|
           unknown protein [Arabidopsis thaliana]
          Length = 385

 Score = 74.7 bits (182), Expect = 5e-13
 Identities = 35/64 (54%), Positives = 45/64 (69%)
 Frame = +1

Query: 241 FQELPDYLQDNEFIQKYYRTPDMPLKRTLWSLFDIHNETGNVWTHLLGFLMFLGLTFYVI 420
           F  LP YL+DNE+I  +YR+ + P+K+ L S+F IHNET NVWTHL+GF +FL LT Y  
Sbjct: 42  FHSLPAYLRDNEYIIGHYRS-EWPIKQILLSIFTIHNETLNVWTHLIGFFLFLALTIYTA 100

Query: 421 KLPP 432
              P
Sbjct: 101 TKVP 104

>ref|NP_197527.1| expressed protein [Arabidopsis thaliana] gi|15982834|gb|AAL09764.1|
           AT5g20270/F5O24_160 [Arabidopsis thaliana]
           gi|21592494|gb|AAM64444.1| unknown [Arabidopsis
           thaliana] gi|23506109|gb|AAN28914.1| At5g20270/F5O24_160
           [Arabidopsis thaliana]
          Length = 332

 Score = 69.7 bits (169), Expect = 2e-11
 Identities = 29/73 (39%), Positives = 49/73 (66%)
 Frame = +1

Query: 190 RRRRRAAPSSSQTPTLAFQELPDYLQDNEFIQKYYRTPDMPLKRTLWSLFDIHNETGNVW 369
           ++R+    +  +   +++ ELP+Y++DNE+I  YYR  D  ++   +S+F  HNE+ NVW
Sbjct: 42  KKRKTQQKTMKRRELMSYCELPEYMKDNEYILNYYRA-DWSIRDAFFSVFSFHNESLNVW 100

Query: 370 THLLGFLMFLGLT 408
           THL+GF+ F+ LT
Sbjct: 101 THLIGFIFFVALT 113

>ref|XP_313784.1| ENSANGP00000012224 [Anopheles gambiae] gi|30176836|gb|EAA09141.2|
           ENSANGP00000012224 [Anopheles gambiae str. PEST]
          Length = 432

 Score = 68.6 bits (166), Expect = 4e-11
 Identities = 30/63 (47%), Positives = 41/63 (64%)
 Frame = +1

Query: 241 FQELPDYLQDNEFIQKYYRTPDMPLKRTLWSLFDIHNETGNVWTHLLGFLMFLGLTFYVI 420
           F+ LP +LQDN+F+ K +R P         S+F IH ETGN+WTHLLG +MF+G+  Y +
Sbjct: 152 FKNLPAWLQDNDFLHKGHRPPLPSFSACFKSIFRIHTETGNIWTHLLGCVMFIGVAAYFL 211

Query: 421 KLP 429
             P
Sbjct: 212 TRP 214



EST assemble image


clone accession position
1 LCL003h07_r AV626188 1 348
2 LCL020c08_r AV627047 6 470
3 HCL004c08_r AV639746 20 185
4 LCL069d03_r AV629933 20 457
5 HCL021f08_r AV640743 27 484
6 MXL041c06_r BP095402 29 415




Chlamydomonas reinhardtii
Kazusa DNA Research Institute