KCC002214A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002214A_C01 KCC002214A_c01
ctgcccTAGAAGTCTTGCTGCTTACCGTGACCTATACTAGTCTAGTCGCGCGCGCTTCTC
GAACCACTATCGCTTCTTTGCTCAGCCGGCCAAACGTATAGAGGCGTCCGGTACCTTTCC
GCCACTCTTGTATAATAACCGCTGGTGATTTGGTGCACCTCATCACTGAGCAGGGCTTCG
GCAGACGGCCATCGCACCATGCGGAGCGTCTTCAGTGATACTTGCTCGGCGGCGCCAAGC
ACTTCTCGGCCGCACGCAGTATCAGTAATTCCATCACGGCCGCGGCGCTATGCTGGTGGC
CGCACGCTTAGTGGACACACGCTCCTAAGCAGTCGGAATGTCGGCAGCGTTGCTGTCAAC
ACTATGGCCCCGGGACCCGGTTGTCAGCCCAGGAGCGGGAGGAGCTCGAGGCCGTGCGCG
CACGCCTGAACCAGCAGCTACAGCTCGTAACGGGGGTATCTCCTTCGGCATCATCTGATC
TCTCAGTGGATGAGCGGCCAACACTGCTGGCGAAAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002214A_C01 KCC002214A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM23309.1| serine acetyl transferase [Chlamydomonas reinhard...   113  8e-45
dbj|BAB62592.1| P0454H12.25 [Oryza sativa (japonica cultivar-gro...    37  0.12
ref|NP_492377.1| SUPpressor SUP-17, metalloendopeptidase ADAM 10...    35  0.75
ref|NP_006292.2| mitogen-activated protein kinase kinase kinase ...    34  0.98
ref|NP_037187.1| mitogen activated protein kinase kinase kinase ...    34  0.98

>gb|AAM23309.1| serine acetyl transferase [Chlamydomonas reinhardtii]
          Length = 392

 Score =  113 bits (282), Expect(2) = 8e-45
 Identities = 56/57 (98%), Positives = 56/57 (98%)
 Frame = +1

Query: 199 MRSVFSDTCSAAPSTSRPHAVSVIPSRPRRYAGGRTLSGHTLLSSRNVGSVAVNTMA 369
           MRSVFSDTCSAAPSTSRPHAVSVIPSRPRRYAGGRTL GHTLLSSRNVGSVAVNTMA
Sbjct: 1   MRSVFSDTCSAAPSTSRPHAVSVIPSRPRRYAGGRTLGGHTLLSSRNVGSVAVNTMA 57

 Score = 89.0 bits (219), Expect(2) = 8e-45
 Identities = 47/47 (100%), Positives = 47/47 (100%)
 Frame = +3

Query: 378 RLSAQEREELEAVRARLNQQLQLVTGVSPSASSDLSVDERPTLLAKA 518
           RLSAQEREELEAVRARLNQQLQLVTGVSPSASSDLSVDERPTLLAKA
Sbjct: 60  RLSAQEREELEAVRARLNQQLQLVTGVSPSASSDLSVDERPTLLAKA 106

>dbj|BAB62592.1| P0454H12.25 [Oryza sativa (japonica cultivar-group)]
           gi|21104780|dbj|BAB93367.1| OJ1529_G03.3 [Oryza sativa
           (japonica cultivar-group)]
          Length = 398

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = +1

Query: 157 TSSLSRASADGHRTMR-SVFSDTCSAAPSTSRPHAVSVIPSRPRRYAGGRTLSGHT---- 321
           +S+ SR S+   RT   S  S + S  PS SR  + S  P+R         L+GH+    
Sbjct: 35  SSAASRPSSSSGRTSTISRTSSSTSTVPSVSRSSSRSSTPTRQPITRSSAPLAGHSPSVG 94

Query: 322 -LLSSRNVGSVAVNTMAPGPGCQPRSGRSSRP 414
            +  S N+ S+     + G    P S  SSRP
Sbjct: 95  RIFGSNNITSIGRPVTSNGRSSAPSSAPSSRP 126

>ref|NP_492377.1| SUPpressor SUP-17, metalloendopeptidase ADAM 10 (101.6 kD) (sup-17)
           [Caenorhabditis elegans] gi|7511488|pir||T37256
           metalloproteinase sup-17 - Caenorhabditis elegans
           gi|2739037|gb|AAB97161.1| ADAM 10 [Caenorhabditis
           elegans] gi|3875352|emb|CAB09416.1| C. elegans SUP-17
           protein (corresponding sequence DY3.7) [Caenorhabditis
           elegans]
          Length = 922

 Score = 34.7 bits (78), Expect = 0.75
 Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
 Frame = +1

Query: 253 HAVSVIPSRPRRYAGGRTLS--GHTLLSSRNVGSVAVNTMAPGPGCQPRSGRSSRP 414
           H  S  P++P      +TL+  G  +   R     A  ++ PGPG QPRSG +S P
Sbjct: 770 HTPSTNPNKPPALNIYQTLTRPGTLIRQHRQRHRAAAGSVPPGPGAQPRSGAASAP 825

>ref|NP_006292.2| mitogen-activated protein kinase kinase kinase 12; leucine zipper
           protein kinase; zipper protein kinase; protein kinase
           MUK; dual leucine zipper kinase DLK [Homo sapiens]
          Length = 859

 Score = 34.3 bits (77), Expect = 0.98
 Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 6/65 (9%)
 Frame = -3

Query: 510 PAVLAAHPLRDQMMPKE--IPPLRAVAAGSGVRARPRAPPAPGLT----TGSRGHSVDSN 349
           P  L+ H  R  ++  E  +P L A  +G G+   P+APP+PG +    T  R  S   +
Sbjct: 496 PQKLSPHSKRPDILKTESLLPKLDAALSGVGLPGCPKAPPSPGRSRRGKTRHRKASAKGS 555

Query: 348 AADIP 334
             D+P
Sbjct: 556 CGDLP 560

>ref|NP_037187.1| mitogen activated protein kinase kinase kinase 12; Mitogen
           activated protein kinase 12 (Zipper (leucine) protein
           kinase); Zipper (leucine) protein kinase [Rattus
           norvegicus] gi|18202599|sp|Q63796|M3KC_RAT
           Mitogen-activated protein kinase kinase kinase 12
           (MAPK-upstream kinase) (MUK) gi|1208444|dbj|BAA08621.1|
           Protein kinase (MUK) [Rattus norvegicus]
          Length = 888

 Score = 34.3 bits (77), Expect = 0.98
 Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 6/65 (9%)
 Frame = -3

Query: 510 PAVLAAHPLRDQMMPKE--IPPLRAVAAGSGVRARPRAPPAPGLT----TGSRGHSVDSN 349
           P  L+ H  R  ++  E  +P L A  +G G+   P+APP+PG +    T  R  S   +
Sbjct: 529 PQKLSPHSKRPDILKTESLLPKLDAALSGVGLPGCPKAPPSPGRSRRGKTRHRKASAKGS 588

Query: 348 AADIP 334
             D+P
Sbjct: 589 CGDLP 593



EST assemble image


clone accession position
1 LCL058a11_r AV629401 1 505
2 LCL084b06_r AV630776 7 529
3 MXL078e08_r BP097616 11 467
4 HCL003g11_r AV639725 21 351
5 MXL047h04_r BP095816 40 508
6 MXL100f06_r BP098877 40 413
7 MX226b09_r BP090594 159 436




Chlamydomonas reinhardtii
Kazusa DNA Research Institute