KCC002212A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002212A_C01 KCC002212A_c01
tgccagtgtctttGAAGTTGTCATTGTTTACAAACACTTCGACGTGTTCAACTCAGCATT
GCAGCTCCGCATTCGGCTCTTACGCTGCTCCTCCCCGCCAAGGATAATGCCCCAAACAGT
GTTCTGAGATTAAATACAATGCACTGAGCAGGCTTAGGTAGGCCCGGCAGCCGGAGACAA
TACAATGGGTCAAGCCGTGAGCTGCACCAGCAAAGGCGCGCTTCTACTGGTGGCAGCTGC
GAATGGAGACCTTGTCACAGCGCAAGAGCTACTGGGAAAGCACCCAAAGGCAGCCTCGTA
CTATAACTTCAAGGACAGGAGCTCTCCGCTGCTTCAAGCGGCAGCGAGGGGCCATTTCGA
GCTGGTTCAGCTCATCCTGGAGACCGCGGTCATGACGGAAGGCCCCGAGCGGGCCAAGCG
GAACTGCATCGACCATGCAAACTCAAAGCGCCAGACTGCGCTCATGGTGGCTTGCAAGCA
CGGGCACCCTGACTGCGTCGAGTACCTGGTGACCAACGGCGGCGACCCGCTGTTGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002212A_C01 KCC002212A_c01
         (537 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC98626.1| receptor-like kinase Xa21-binding protein 3-like...    72  6e-12
gb|AAM92304.1| hypothetical protein [Oryza sativa (japonica cult...    70  1e-11
dbj|BAB09592.1| contains similarity to ankyrin~gene_id:MRI1.10 [...    69  3e-11
ref|NP_200582.2| expressed protein [Arabidopsis thaliana]              69  3e-11
ref|NP_196344.1| expressed protein [Arabidopsis thaliana] gi|113...    68  7e-11

>dbj|BAC98626.1| receptor-like kinase Xa21-binding protein 3-like [Oryza sativa
           (japonica cultivar-group)]
          Length = 495

 Score = 71.6 bits (174), Expect = 6e-12
 Identities = 43/109 (39%), Positives = 63/109 (57%)
 Frame = +2

Query: 185 MGQAVSCTSKGALLLVAAANGDLVTAQELLGKHPKAASYYNFKDRSSPLLQAAARGHFEL 364
           +G +  C++ G  L+ AA +GD+  A  LL  +P+ A Y  F  R+SPL  +AA+GH E+
Sbjct: 7   VGDSFGCSATGERLVSAARDGDIQEAMALLELNPRLARYSTFGIRNSPLHYSAAKGHHEI 66

Query: 365 VQLILETAVMTEGPERAKRNCIDHANSKRQTALMVACKHGHPDCVEYLV 511
           V L++E+     G +   RNC      + QTALM AC +GH   V+ LV
Sbjct: 67  VSLLIES-----GVDINLRNC------RGQTALMQACLYGHWKVVQILV 104

>gb|AAM92304.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 539

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 43/109 (39%), Positives = 61/109 (55%)
 Frame = +2

Query: 185 MGQAVSCTSKGALLLVAAANGDLVTAQELLGKHPKAASYYNFKDRSSPLLQAAARGHFEL 364
           MG ++ C++ G  L+ AA +GD V A+ LL   P  A Y  F   +SPL  AAA+GH ++
Sbjct: 1   MGNSLGCSASGERLVSAARDGDAVEARMLLELSPALARYSTFGGLNSPLHFAAAKGHLDI 60

Query: 365 VQLILETAVMTEGPERAKRNCIDHANSKRQTALMVACKHGHPDCVEYLV 511
           V L+LE           K   ++  N   QTALM AC+HGH + V+ L+
Sbjct: 61  VTLLLE-----------KGADVNVRNYCGQTALMHACRHGHWEVVQMLL 98

>dbj|BAB09592.1| contains similarity to ankyrin~gene_id:MRI1.10 [Arabidopsis
           thaliana]
          Length = 468

 Score = 69.3 bits (168), Expect = 3e-11
 Identities = 41/111 (36%), Positives = 66/111 (58%), Gaps = 1/111 (0%)
 Frame = +2

Query: 185 MGQAVSCTSKGALLLVAAANGDLVTAQELLGKHPKAASYYNFKDRSSPLLQAAARGHFEL 364
           +G +  C++ G  L+ AA +GDL  A+ LL  +P+ A Y  F  R+SPL  +AA+GH E+
Sbjct: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHEI 66

Query: 365 VQLILETAV-MTEGPERAKRNCIDHANSKRQTALMVACKHGHPDCVEYLVT 514
           V L++E+ V +     R + +  D+ N    TAL +A  +GHP C+  L++
Sbjct: 67  VSLLVESGVDINLRNYRGQIHRSDYLNG--GTALHLAALNGHPRCIRILLS 115

>ref|NP_200582.2| expressed protein [Arabidopsis thaliana]
          Length = 484

 Score = 69.3 bits (168), Expect = 3e-11
 Identities = 41/111 (36%), Positives = 66/111 (58%), Gaps = 1/111 (0%)
 Frame = +2

Query: 185 MGQAVSCTSKGALLLVAAANGDLVTAQELLGKHPKAASYYNFKDRSSPLLQAAARGHFEL 364
           +G +  C++ G  L+ AA +GDL  A+ LL  +P+ A Y  F  R+SPL  +AA+GH E+
Sbjct: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHEI 66

Query: 365 VQLILETAV-MTEGPERAKRNCIDHANSKRQTALMVACKHGHPDCVEYLVT 514
           V L++E+ V +     R + +  D+ N    TAL +A  +GHP C+  L++
Sbjct: 67  VSLLVESGVDINLRNYRGQIHRSDYLNG--GTALHLAALNGHPRCIRILLS 115

>ref|NP_196344.1| expressed protein [Arabidopsis thaliana] gi|11358268|pir||T48498
           hypothetical protein T28J14.210 - Arabidopsis thaliana
           gi|7546705|emb|CAB87283.1| putative protein [Arabidopsis
           thaliana]
          Length = 519

 Score = 68.2 bits (165), Expect = 7e-11
 Identities = 42/109 (38%), Positives = 60/109 (54%)
 Frame = +2

Query: 185 MGQAVSCTSKGALLLVAAANGDLVTAQELLGKHPKAASYYNFKDRSSPLLQAAARGHFEL 364
           MG +  C++ G  L+ AA +GD V A+ LL  +P  A Y  F   +SPL  AAA+GH E+
Sbjct: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 365 VQLILETAVMTEGPERAKRNCIDHANSKRQTALMVACKHGHPDCVEYLV 511
           V L+LE               ++  N   QTALM AC++GH + V+ L+
Sbjct: 61  VGLLLENGA-----------DVNSRNYCGQTALMQACRYGHWEVVQTLL 98



EST assemble image


clone accession position
1 HCL027d06_r AV641079 1 537
2 HCL003e09_r AV639713 14 311




Chlamydomonas reinhardtii
Kazusa DNA Research Institute