Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002211A_C01 KCC002211A_c01
(465 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH55550.1| Unknown (protein for MGC:66214) [Danio rerio] 108 2e-23
gb|AAH44380.1| Similar to U5 small nuclear ribonucleoprotein 116... 108 4e-23
gb|AAH02360.1|AAH02360 U5 snRNP-specific protein, 116 kD [Homo s... 102 2e-21
ref|NP_004238.1| U5 snRNP-specific protein, 116 kD [Homo sapiens... 102 2e-21
ref|XP_213492.2| similar to 116 kDa U5 small nuclear ribonucleop... 102 2e-21
>gb|AAH55550.1| Unknown (protein for MGC:66214) [Danio rerio]
Length = 398
Score = 108 bits (271), Expect = 2e-23
Identities = 54/97 (55%), Positives = 66/97 (67%)
Frame = +3
Query: 174 MAEDMYDEFGNYIGPALEDSEEEEEEHQVQHGFGGSEGADDEDGAPGPGDAMQEDDDEGG 353
M D+YDEFGNYIGP L+ E+EE + + + E DD+D A + D+D GG
Sbjct: 1 METDLYDEFGNYIGPELDSDEDEELDAEDRDADEADEEDDDDDQA-------EADEDGGG 53
Query: 354 PGMAVVLHEDKKYYPSAEEIYGAEVETLVMEEDAQPL 464
GM VVLHEDKKYYP+AEE+YG EVET+V EED QPL
Sbjct: 54 GGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPL 90
>gb|AAH44380.1| Similar to U5 small nuclear ribonucleoprotein 116 kDa [Danio rerio]
Length = 686
Score = 108 bits (269), Expect = 4e-23
Identities = 54/97 (55%), Positives = 66/97 (67%)
Frame = +3
Query: 174 MAEDMYDEFGNYIGPALEDSEEEEEEHQVQHGFGGSEGADDEDGAPGPGDAMQEDDDEGG 353
M D+YDEFGNYIGP L+ E+EE + + + E DD+D A + D+D GG
Sbjct: 1 METDLYDEFGNYIGPELDSDEDEELDAEDRVADEADEEDDDDDQA-------EADEDGGG 53
Query: 354 PGMAVVLHEDKKYYPSAEEIYGAEVETLVMEEDAQPL 464
GM VVLHEDKKYYP+AEE+YG EVET+V EED QPL
Sbjct: 54 GGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPL 90
>gb|AAH02360.1|AAH02360 U5 snRNP-specific protein, 116 kD [Homo sapiens]
Length = 972
Score = 102 bits (254), Expect = 2e-21
Identities = 52/97 (53%), Positives = 63/97 (64%)
Frame = +3
Query: 174 MAEDMYDEFGNYIGPALEDSEEEEEEHQVQHGFGGSEGADDEDGAPGPGDAMQEDDDEGG 353
M D+YDEFGNYIGP L+ E+++E + + DD+D D DDD
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDD------DVGDHDDDH-- 52
Query: 354 PGMAVVLHEDKKYYPSAEEIYGAEVETLVMEEDAQPL 464
PGM VVLHEDKKYYP+AEE+YG EVET+V EED QPL
Sbjct: 53 PGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPL 89
>ref|NP_004238.1| U5 snRNP-specific protein, 116 kD [Homo sapiens]
gi|18202501|sp|Q15029|U5S1_HUMAN 116 kDa U5 small
nuclear ribonucleoprotein component (U5 snRNP-specific
protein, 116 kDa) (U5-116 kDa) gi|434759|dbj|BAA04699.1|
KIAA0031 [Homo sapiens]
Length = 972
Score = 102 bits (254), Expect = 2e-21
Identities = 52/97 (53%), Positives = 63/97 (64%)
Frame = +3
Query: 174 MAEDMYDEFGNYIGPALEDSEEEEEEHQVQHGFGGSEGADDEDGAPGPGDAMQEDDDEGG 353
M D+YDEFGNYIGP L+ E+++E + + DD+D D DDD
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDD------DVGDHDDDH-- 52
Query: 354 PGMAVVLHEDKKYYPSAEEIYGAEVETLVMEEDAQPL 464
PGM VVLHEDKKYYP+AEE+YG EVET+V EED QPL
Sbjct: 53 PGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPL 89
>ref|XP_213492.2| similar to 116 kDa U5 small nuclear ribonucleoprotein component (U5
snRNP-specific protein, 116 kDa) (U5-116 kDa) [Rattus
norvegicus]
Length = 1027
Score = 102 bits (254), Expect = 2e-21
Identities = 52/97 (53%), Positives = 64/97 (65%)
Frame = +3
Query: 174 MAEDMYDEFGNYIGPALEDSEEEEEEHQVQHGFGGSEGADDEDGAPGPGDAMQEDDDEGG 353
M D+YDEFGNYIGP L+ E+++E + + +DED D + DDD
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDEDEDED------DVGEHDDDH-- 52
Query: 354 PGMAVVLHEDKKYYPSAEEIYGAEVETLVMEEDAQPL 464
PGM VVLHEDKKYYP+AEE+YG EVET+V EED QPL
Sbjct: 53 PGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPL 89
