KCC002210A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002210A_C01 KCC002210A_c01
ctcatagtggttgtaTTCGAGCGAACGGCGCTCGGAACCGGCAGGGTTTTGTCCTTCCAA
CATTCGCACCTCCAGGGCCTTGGCCCAGCGGTCTAGTGTCTTGGTGTGGGGCTCGCTCCT
AGGAGCGCCATGTCCGGCACCGAGTCCCAAAGCAGGACTTTGCTCCTAGTGTCAGCGGGA
GCGGTGCTGGGCGGTGCTATTGCGTTTGGAGCAGCATTTGGATTGGCTCATGCTTATAGC
AAGCGCCTGGATGCTTTGGAGGAGCAGAAGAAGGGCAGTGTCGGGGCACTGCCGACGCCG
CCTCAATCGGCACCTGCAGCTATGATTGCGCGCAAACCCGAACCACAGCTGGTGCAGCCC
TACCCGGTCAACGGCAGCGGTCTCAACGGCGGGCTTGTGCAGCCGGTGCCGATGGGCCTG
GCACCCGCGCCAAAGCCGCTGCACATGCACGCGCCGGTGCAGGCGGTGCAGGCTGCAGAA
CACGCGATCATGTCGCCGCGCGTGGCGCACGTCCGCGCTGCTCGGCCGCATGATGCCATG
GCGCCGTACAGTCCGTACCCTGnGCAGGCGGGTGAGGCCAGCGGCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002210A_C01 KCC002210A_c01
         (588 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_638265.1| antifreeze glycopeptide AFGP related protein [X...    45  6e-04
ref|NP_787279.1| unknown [Tropheryma whipplei str. Twist] gi|284...    44  0.001
ref|NP_295868.1| ABC transporter, ATP-binding protein [Deinococc...    42  0.006
ref|NP_103505.1| probable transcriptional repressor [Mesorhizobi...    42  0.008
emb|CAD98435.1| hydroxyproline-rich glycoprotein dz-hrgp precurs...    42  0.008

>ref|NP_638265.1| antifreeze glycopeptide AFGP related protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
           gi|21114120|gb|AAM42189.1| antifreeze glycopeptide AFGP
           related protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 628

 Score = 45.4 bits (106), Expect = 6e-04
 Identities = 48/150 (32%), Positives = 63/150 (42%), Gaps = 9/150 (6%)
 Frame = -3

Query: 577 PHPPAQGTDCTAPWHHAAEQRGRAPRAAT*SRVL------QPAPPAPARACAAALARVPG 416
           P P AQ  D  A      +    AP ++T S         QPA P+PA A A A   +P 
Sbjct: 324 PLPMAQLIDAPAASSMVVQAPIDAPPSSTASSTASAPAYAQPALPSPAEAPAGAAKSLPA 383

Query: 415 PSAPAAQARR*DRCR*PGRAAPAVVRVCAQS*LQVPIEAASAVPRHCPSSA-PPKHPGAC 239
           P+ P A A      R     AP+ V V A   L  P+   +A     P++A PP  P A 
Sbjct: 384 PAPPLAPA----VARPAPAPAPSDVAVAAALSLPEPMAEGNAAAEAAPTAAPPPPAPIAA 439

Query: 238 YKHEPI--QMLLQTQ*HRPAPLPLTLGAKS 155
            + +      L QT   RPA +P    A+S
Sbjct: 440 SQADASADASLAQTTLMRPAAMPSRTSAES 469

>ref|NP_787279.1| unknown [Tropheryma whipplei str. Twist] gi|28476158|gb|AAO44248.1|
           unknown [Tropheryma whipplei str. Twist]
          Length = 460

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 58/193 (30%), Positives = 73/193 (37%), Gaps = 17/193 (8%)
 Frame = -3

Query: 571 PPAQGTDCT-APWHHAAEQRGRAPRAAT*SRVLQPAPPAPARACAAALARVPGPSAPAAQ 395
           PPA+      AP   AA Q  +AP+ A      +PAP  PA A  A     P  +  AAQ
Sbjct: 160 PPAKPAAAKPAPAKPAATQATQAPKPAA----AKPAPAKPAAAKPAPAKPAPSEATQAAQ 215

Query: 394 ARR*DRCR*PGRAAPAVVRVCAQS*LQVPIEAASAVP---RHCPSSA-----PPKHPG-- 245
                    P  A PA  +    +    P + A+A P   +  PS A     PP  P   
Sbjct: 216 PPAKPAAAKPAPAKPAATQATQATKPAAPAKPAAAKPAPAKPAPSEATQAAQPPAKPAAA 275

Query: 244 --ACYKHEPIQ--MLLQTQ*HRPAPLPLTLGAKSCFGTRCRTWRS*ERAPHQDTRPLGQG 77
             A  K  P +      TQ  +PA       AK    T      S  +AP Q T+P  + 
Sbjct: 276 KPAAAKPAPAKPAATQATQATKPAAPAKPAAAKPAAATH----SSSTQAPSQVTKPAAEK 331

Query: 76  PGG--ANVGRTKP 44
           P    AN   TKP
Sbjct: 332 PSSTVANTQVTKP 344

 Score = 34.7 bits (78), Expect = 1.0
 Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +1

Query: 292 PTPPQS--APAAMIARKPEPQLVQPYPVNGSGLNGGLVQPVPMGLAPAPKPLHMHAPVQA 465
           P P  +  APA   A KP P   +P P   +       +P     APA KP    A  QA
Sbjct: 127 PKPAAAKPAPAKPAAAKPAP--AKPAPSEATQAAQPPAKPAAAKPAPA-KP----AATQA 179

Query: 466 VQAAEHAIMSPRVAHVRAARPHDAMAPYSPYPXQAGEAS 582
            QA + A   P  A   AA+P    AP  P P +A +A+
Sbjct: 180 TQAPKPAAAKPAPAKPAAAKP----APAKPAPSEATQAA 214

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 32/105 (30%), Positives = 42/105 (39%)
 Frame = -3

Query: 571 PPAQGTDCTAPWHHAAEQRGRAPRAAT*SRVLQPAPPAPARACAAALARVPGPSAPAAQA 392
           PPA+    T   H ++ Q   AP +A      +PAP  PA A  A     P  +  AAQ 
Sbjct: 107 PPAKPAAAT---HSSSTQ---APSSAPKPAAAKPAPAKPAAAKPAPAKPAPSEATQAAQP 160

Query: 391 RR*DRCR*PGRAAPAVVRVCAQS*LQVPIEAASAVPRHCPSSAPP 257
                   P  A PA  +  A    Q P  AA+      P++A P
Sbjct: 161 P-----AKPAAAKPAPAKPAATQATQAPKPAAAKPAPAKPAAAKP 200

 Score = 31.6 bits (70), Expect = 8.6
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
 Frame = +1

Query: 286 ALPTPPQSAPAAMIARKPEPQLVQPYPVNGSGLNGGLVQPVPMGLAPAPKPLHMHA---P 456
           A P P + A A    + P+P   +P P   +       +P P     A +P    A   P
Sbjct: 167 AKPAPAKPA-ATQATQAPKPAAAKPAPAKPAAAKPAPAKPAPSEATQAAQPPAKPAAAKP 225

Query: 457 VQAVQAAEHAIMSPRVAHVRAARPHDAM-APYSPYPXQAGEAS 582
             A  AA  A  + + A    A+P  A  AP  P P +A +A+
Sbjct: 226 APAKPAATQATQATKPA--APAKPAAAKPAPAKPAPSEATQAA 266

>ref|NP_295868.1| ABC transporter, ATP-binding protein [Deinococcus radiodurans]
           gi|7471037|pir||F75311 ABC transporter, ATP-binding
           protein - Deinococcus radiodurans (strain R1)
           gi|6459937|gb|AAF11688.1|AE002048_8 ABC transporter,
           ATP-binding protein [Deinococcus radiodurans]
          Length = 552

 Score = 42.0 bits (97), Expect = 0.006
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +3

Query: 285 GTADAASIGTCSYDCAQTRTTAGAALPGQRQRSQRRACAAG---ADGPGTRAKAAAHARA 455
           G   A+S G+  +      TTA    PG R R +R A AA    ADGP  R        A
Sbjct: 55  GLTIASSTGSFIHSSDVAATTAAPRPPGTRHRHRRGAGAAPRPFADGPARRG-------A 107

Query: 456 GAGGAGCRTRDHVAARGARPRCS 524
            AGGA  R ++H AA   R  C+
Sbjct: 108 AAGGAERRRQNHAAAAARRASCA 130

>ref|NP_103505.1| probable transcriptional repressor [Mesorhizobium loti]
           gi|14022682|dbj|BAB49291.1| probable transcriptional
           repressor [Mesorhizobium loti]
          Length = 586

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 36/105 (34%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
 Frame = +1

Query: 274 GSVGALPTPPQSAPAAMIARKP-EPQLVQPYPVNGSGLNGGLVQPVPM---GLAPAPKPL 441
           G V A P  P+ A       KP EP+L +P P    G +     P P+      PAP P+
Sbjct: 179 GEVTARPNEPKMAEPKPSEPKPDEPKLTEPKPAEPKGQDVASAPPAPVPAPAPQPAPPPI 238

Query: 442 HMHAPVQAVQAAEHAIMSPR-VAHVR-AARPHDAMAPYSPYPXQA 570
             + P  AV AA    M P  VA    A  P   +AP  P P  A
Sbjct: 239 AANPPPVAVPAAPPVAMPPAPVAPPEVAVIPPPTVAPLPPPPPAA 283

>emb|CAD98435.1| hydroxyproline-rich glycoprotein dz-hrgp precursor, probable
           [Cryptosporidium parvum]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +1

Query: 292 PTPPQSAPAAMIARKPEPQLVQPYPVNGSGLNGGLVQPVPMGLAPAPKPLHMHAPVQAVQ 471
           P PP   P+      P P  + PYPV GS  +  +  P+PM   P P P+ M  P+   Q
Sbjct: 105 PPPPPPLPSPPPPTLPPPPSLPPYPVPGSQSSMPMPMPMPM---PMPMPMPMPMPMPTNQ 161

Query: 472 AAEHAIMSPRVAHVRAARPHDAMAPY-SPYPXQAGEASGS 588
                   P     +A RP   +  Y +P P + G+ S +
Sbjct: 162 --------PYAPISQAPRPLPQLGSYFTPRPWKGGDNSSN 193



EST assemble image


clone accession position
1 HCL003b04_r AV639688 1 455
2 LCL098b08_r AV631683 16 436
3 HCL009f12_r AV640067 21 237
4 LCL076h02_r AV630297 269 588




Chlamydomonas reinhardtii
Kazusa DNA Research Institute