KCC002208A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002208A_C01 KCC002208A_c01
tacatgcccacggtggcttgtatgcaacaCGAAATCTACATCGCTAGCTCAAAGCGCACG
GCGTCACGCCTTGGCAGTCGCCACAACACGGTCTTGCTCTTCTGCTCGGATTGGTTGCCA
TGAGAGAATTGCGACGTTAGCATCTGTTCCTGGGCCTGTCAGAGCAAGAGCGGCGGCCTG
GCCAACTCGCGAACAACCCGTGTTGACTGTGCTCGCTGACGGCGTCCTATAACCGGCCAG
TCGCTGTAGCCATTGAAAGATGAATGCATTACTGCTGCGGAATTTGGGCGGGCTGCGGCG
AAGCAGCTCGCTTGTGTCTTTTGCCGAATACAAGCAATCCGAGGCGTCAAACCCCCAGAT
GTCCTCAGTTACGTCTGAAGGGACGCTGCTCGAGTACGAAACGCTGGAGCTACGCATCCA
CCCGCCAAACGTGGTTATTGACAACGAGACATACGAGGATGTCACAGTGATTACCATCGA
CAGCGCGAACCGGCCTGGGACGCTTATCGAGGTGGTGCAATGCTTGACCGAGCTGGGCCT
C


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002208A_C01 KCC002208A_c01
         (541 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F84451 probable uridylyl transferase [imported] - Arabidops...    61  1e-08
ref|NP_565304.1| ACT domain-containing protein [Arabidopsis thal...    61  1e-08
ref|NP_565146.1| uridylyltransferase-related [Arabidopsis thalia...    60  2e-08
gb|AAM65519.1| unknown [Arabidopsis thaliana]                          60  2e-08
ref|NP_186848.1| ACT domain-containing protein [Arabidopsis thal...    59  3e-08

>pir||F84451 probable uridylyl transferase [imported] - Arabidopsis thaliana
           gi|22138100|gb|AAM93430.1| ACR5 [Arabidopsis thaliana]
          Length = 446

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 29/43 (67%), Positives = 35/43 (80%)
 Frame = +2

Query: 413 RIHPPNVVIDNETYEDVTVITIDSANRPGTLIEVVQCLTELGL 541
           R++PP VVIDNE  +DVTVI +DSAN+ G L+EVVQ LTEL L
Sbjct: 11  RVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNL 53

>ref|NP_565304.1| ACT domain-containing protein [Arabidopsis thaliana]
           gi|20197900|gb|AAD20075.2| putative uridylyl transferase
           [Arabidopsis thaliana] gi|24030269|gb|AAN41308.1|
           putative uridylyl transferase [Arabidopsis thaliana]
          Length = 456

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 29/43 (67%), Positives = 35/43 (80%)
 Frame = +2

Query: 413 RIHPPNVVIDNETYEDVTVITIDSANRPGTLIEVVQCLTELGL 541
           R++PP VVIDNE  +DVTVI +DSAN+ G L+EVVQ LTEL L
Sbjct: 21  RVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNL 63

>ref|NP_565146.1| uridylyltransferase-related [Arabidopsis thaliana]
           gi|30699222|ref|NP_849896.1| uridylyltransferase-related
           [Arabidopsis thaliana] gi|30699224|ref|NP_849897.1|
           uridylyltransferase-related [Arabidopsis thaliana]
           gi|25370628|pir||H96798 hypothetical protein F22K20.9
           [imported] - Arabidopsis thaliana
           gi|2829923|gb|AAC00631.1| Similar to uridylyl
           transferases [Arabidopsis thaliana]
           gi|13430820|gb|AAK26032.1|AF360322_1 unknown protein
           [Arabidopsis thaliana] gi|21280959|gb|AAM44939.1|
           unknown protein [Arabidopsis thaliana]
           gi|22138096|gb|AAM93428.1| ACR3 [Arabidopsis thaliana]
          Length = 453

 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 27/50 (54%), Positives = 38/50 (76%)
 Frame = +2

Query: 392 EYETLELRIHPPNVVIDNETYEDVTVITIDSANRPGTLIEVVQCLTELGL 541
           EYE L  RI+PP+V IDN + ++ T++ +DS N+PG L+EVVQ LT+L L
Sbjct: 12  EYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDL 61

>gb|AAM65519.1| unknown [Arabidopsis thaliana]
          Length = 453

 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 27/50 (54%), Positives = 38/50 (76%)
 Frame = +2

Query: 392 EYETLELRIHPPNVVIDNETYEDVTVITIDSANRPGTLIEVVQCLTELGL 541
           EYE L  RI+PP+V IDN + ++ T++ +DS N+PG L+EVVQ LT+L L
Sbjct: 12  EYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDL 61

>ref|NP_186848.1| ACT domain-containing protein [Arabidopsis thaliana]
           gi|6513932|gb|AAF14836.1|AC011664_18 unknown protein
           [Arabidopsis thaliana] gi|22138102|gb|AAM93431.1| ACR6
           [Arabidopsis thaliana] gi|26451489|dbj|BAC42843.1|
           unknown protein [Arabidopsis thaliana]
           gi|28973303|gb|AAO63976.1| unknown protein [Arabidopsis
           thaliana]
          Length = 433

 Score = 59.3 bits (142), Expect = 3e-08
 Identities = 28/50 (56%), Positives = 36/50 (72%)
 Frame = +2

Query: 392 EYETLELRIHPPNVVIDNETYEDVTVITIDSANRPGTLIEVVQCLTELGL 541
           EY  L  R++PP VVIDN   +D TVI +DS N+ GTL+EVVQ LT++ L
Sbjct: 5   EYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNL 54



EST assemble image


clone accession position
1 LCL032h08_r AV627850 1 486
2 HCL037h05_r AV641636 30 468
3 HCL003a11_r AV639684 82 368
4 LCL010a07_r AV626487 124 541




Chlamydomonas reinhardtii
Kazusa DNA Research Institute