KCC002206A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002206A_C01 KCC002206A_c01
gctaggaacgcctgcccacatcgttgtaactttagcaaaGACCGTGCTCCGGCGAGGCAG
CTCTTTGGTCGCGACCGCCCACCTATACCACACGCACGAGCTGAACGAAGCCTTTGAGCA
CATCGCAAAGGCAACTGCGCCAACACCCGAGGCGCACGCTACTCGGCAAAACCTCATCTT
ACGGGTGCAGCAGTCGATAGACAAGCTCGGTCAGCCACTCAAAGTCTCTCCCTTCGGGTC
CTTCGTTTCTGGACACTATGACGCCAAGTCTGACCTAGACCTGGTCCTATCGGGCCAGGT
GCCCTCTGCCCGTAGAAGGAGGGGCCAGAAGCAGGAGGATGGAGCGCTTATGCCGCTGCA
CGCCGCGGCCAGGGCTGCACGCACGCGCGCGCTGCACCAGGTGGTGGCGCAGCTGCTCGC
GGACGGCGTCACCAGCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002206A_C01 KCC002206A_c01
         (439 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_572490.1| CG11265-PA [Drosophila melanogaster] gi|2283195...    45  2e-04
gb|AAQ23600.1| RE04457p [Drosophila melanogaster]                      45  2e-04
ref|NP_592885.1| putative topoisomerase 1-related protein [Schiz...    45  3e-04
pir||S62544 hypothetical protein SPAC12G12.13c - fission yeast  ...    45  3e-04
ref|XP_321548.1| ENSANGP00000023289 [Anopheles gambiae] gi|30173...    44  5e-04

>ref|NP_572490.1| CG11265-PA [Drosophila melanogaster] gi|22831959|gb|AAF46390.2|
           CG11265-PA [Drosophila melanogaster]
          Length = 1029

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 35/65 (53%)
 Frame = +2

Query: 101 LNEAFEHIAKATAPTPEAHATRQNLILRVQQSIDKLGQPLKVSPFGSFVSGHYDAKSDLD 280
           L+E  EH  +   PTP  HA R  ++ R++  +  +     V  FGSF +G +   SD+D
Sbjct: 271 LHEEIEHFYQYVLPTPCEHAIRNEVVKRIEAVVHSIWPQAVVEIFGSFRTGLFLPTSDID 330

Query: 281 LVLSG 295
           LV+ G
Sbjct: 331 LVVLG 335

>gb|AAQ23600.1| RE04457p [Drosophila melanogaster]
          Length = 1001

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 35/65 (53%)
 Frame = +2

Query: 101 LNEAFEHIAKATAPTPEAHATRQNLILRVQQSIDKLGQPLKVSPFGSFVSGHYDAKSDLD 280
           L+E  EH  +   PTP  HA R  ++ R++  +  +     V  FGSF +G +   SD+D
Sbjct: 271 LHEEIEHFYQYVLPTPCEHAIRNEVVKRIEAVVHSIWPQAVVEIFGSFRTGLFLPTSDID 330

Query: 281 LVLSG 295
           LV+ G
Sbjct: 331 LVVLG 335

>ref|NP_592885.1| putative topoisomerase 1-related protein [Schizosaccharomyces
           pombe] gi|11182453|sp|Q9UTN3|YAGD_SCHPO Putative
           topoisomerase 1-related protein
           gi|3850058|emb|CAA91508.1| SPAC12G12.13c
           [Schizosaccharomyces pombe]
          Length = 616

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 25/73 (34%), Positives = 38/73 (51%)
 Frame = +2

Query: 119 HIAKATAPTPEAHATRQNLILRVQQSIDKLGQPLKVSPFGSFVSGHYDAKSDLDLVLSGQ 298
           H      PTPE HA R+ L+ R+ Q++ +    + +  FGSF +  Y   SDLDLV+   
Sbjct: 179 HFIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVI--- 235

Query: 299 VPSARRRRGQKQE 337
           +      RG K++
Sbjct: 236 ISPEHHYRGTKKD 248

>pir||S62544 hypothetical protein SPAC12G12.13c - fission yeast
            (Schizosaccharomyces pombe)
          Length = 1253

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 25/73 (34%), Positives = 38/73 (51%)
 Frame = +2

Query: 119  HIAKATAPTPEAHATRQNLILRVQQSIDKLGQPLKVSPFGSFVSGHYDAKSDLDLVLSGQ 298
            H      PTPE HA R+ L+ R+ Q++ +    + +  FGSF +  Y   SDLDLV+   
Sbjct: 816  HFIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVI--- 872

Query: 299  VPSARRRRGQKQE 337
            +      RG K++
Sbjct: 873  ISPEHHYRGTKKD 885

>ref|XP_321548.1| ENSANGP00000023289 [Anopheles gambiae] gi|30173792|gb|EAA43165.1|
           ENSANGP00000023289 [Anopheles gambiae str. PEST]
          Length = 764

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 23/66 (34%), Positives = 35/66 (52%)
 Frame = +2

Query: 101 LNEAFEHIAKATAPTPEAHATRQNLILRVQQSIDKLGQPLKVSPFGSFVSGHYDAKSDLD 280
           L++  E        TP  HA R  ++ R+++ +  L    +V  FGSF +G Y   SD+D
Sbjct: 271 LHQEIEQFYAHMIATPTEHALRVMVVSRIEKIVQNLWPSARVEMFGSFRTGLYLPTSDID 330

Query: 281 LVLSGQ 298
           LV+ GQ
Sbjct: 331 LVVIGQ 336



EST assemble image


clone accession position
1 HCL002f07_r AV639663 1 439
2 MXL085g09_r BP098040 40 420




Chlamydomonas reinhardtii
Kazusa DNA Research Institute