KCC002203A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002203A_C01 KCC002203A_c01
gacttcaaggataacaacaaagagttttcgcatagccggccgctgcggaacgttttgtgc
atttcttattgtatcactgcCGTAGATTGTAGACAACTCTTGCTTCAACTTAATAAGACC
GTTTCCCATGGGGAAAGGGCGTGACTCCGGGAGGCGCCAAGCGGAGTCCCGCCCAGCGGC
TGTCGGCTGAACGCGGAAGACTGCAGCTCATTGCTGCGCAGGGCTGGCGGGGACCTGCTG
TGTGGCATGACCAAGATGGAATGCGCAGGGCCAGGAGGCTTCAAAGGCCTCAAGTGGAAA
TGGATGCAGGACCACGTGAAGGAGCAGGAGCAGCGTCAGGCTCTGCAGCAGGTGCAGCCG
TCTGCGGGGCCGGGTGCTTCACCCCCACCCCCAGAGGTGGCGCCAGCGCCCGCGCACTGC
TCGGGGGTTGGTGCTCCTGTTGACGGGGCTCAGCCCACAACAACGCAGCGCAGCTTAAGA
GGGGGCTCCCAATCGGGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002203A_C01 KCC002203A_c01
         (499 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P33485|VNUA_PRVKA PROBABLE NUCLEAR ANTIGEN gi|418708|pir||B45...    41  0.007
ref|NP_524200.1| Adult enhancer factor 1 CG5683-PB [Drosophila m...    40  0.021
dbj|BAC04411.1| unnamed protein product [Homo sapiens]                 40  0.021
ref|ZP_00021739.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenas...    39  0.027
ref|NP_572244.1| CG15778-PA [Drosophila melanogaster] gi|7290612...    39  0.046

>sp|P33485|VNUA_PRVKA PROBABLE NUCLEAR ANTIGEN gi|418708|pir||B45344 probable nuclear
            antigen - suid herpesvirus 1 (strain Kaplan)
            gi|334072|gb|AAA47471.1| ORF-3 protein
          Length = 1733

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
 Frame = -3

Query: 446  PSTGAPTPEQCAGAGATSG------GGGEAPGPADG-----CTCCRA*R 333
            P  G P+P  C GAG   G      GGG APG A G     C CCR  R
Sbjct: 1641 PPRGGPSPRGCRGAGRAGGGGRGGCGGGRAPGAAGGPGLCRCECCRGRR 1689

>ref|NP_524200.1| Adult enhancer factor 1 CG5683-PB [Drosophila melanogaster]
           gi|24668061|ref|NP_730630.1| Adult enhancer factor 1
           CG5683-PA [Drosophila melanogaster]
           gi|24668067|ref|NP_730631.1| Adult enhancer factor 1
           CG5683-PC [Drosophila melanogaster]
           gi|728814|sp|P39413|AEF1_DROME Adult enhancer factor 1
           (AEF-1) gi|345477|pir||A44496 transcription repressor
           factor AEF-1, adult enhancer factor 1 - fruit fly
           (Drosophila melanogaster) gi|7296433|gb|AAF51720.1|
           CG5683-PC [Drosophila melanogaster]
           gi|7296434|gb|AAF51721.1| CG5683-PA [Drosophila
           melanogaster] gi|7296435|gb|AAF51722.1| CG5683-PB
           [Drosophila melanogaster] gi|16648418|gb|AAL25474.1|
           LD46228p [Drosophila melanogaster]
          Length = 308

 Score = 39.7 bits (91), Expect = 0.021
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 307 QDHVKEQEQRQALQQVQPSAGPGASPPPPEVAPAP--AHCSGVGAPVDGA 450
           Q   ++Q+Q+   QQ Q S+GP + PPPP   P P   H SG+ A    A
Sbjct: 59  QQQQQQQQQQHHQQQQQQSSGPPSVPPPPTELPLPFQMHLSGISAEAHSA 108

>dbj|BAC04411.1| unnamed protein product [Homo sapiens]
          Length = 384

 Score = 39.7 bits (91), Expect = 0.021
 Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 15/140 (10%)
 Frame = -1

Query: 490 GSPLLSCAALLWAEPRQQEHQPPSSARA-----LAPPLGVGVKHPAPQTAAPAAEPDAAP 326
           G P   C    W E R+Q  +   + RA     L PPL  G   P    A  A +P+  P
Sbjct: 167 GRPEAGC----WLENRRQRRRKAGAERAGAGPTLTPPLPAGSPDPPSPAATAAPQPEQRP 222

Query: 325 APSRGPASIST*GL*SLLALRIPSWSCHTAGPRQPCAAMSCSLPRSADSRWAGLRL---- 158
             SRG           LL  R P  +  +AG        SCS  R+  +  +G  +    
Sbjct: 223 HLSRGQW--------RLLPRRRPERAAGSAG--------SCSSRRALPASGSGAAMTGSW 266

Query: 157 -APP-----GVTPFPHGKRS 116
            APP     G+ PF H +RS
Sbjct: 267 AAPPRPAWAGLGPFWHLRRS 286

>ref|ZP_00021739.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide acyltransferase (E2) component, and
           related enzymes [Ralstonia metallidurans]
          Length = 554

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 24/67 (35%), Positives = 30/67 (43%)
 Frame = -1

Query: 493 IGSPLLSCAALLWAEPRQQEHQPPSSARALAPPLGVGVKHPAPQTAAPAAEPDAAPAPSR 314
           +G  +   + L+  EP       P+ A A AP        PAP  AAPA    AAPAP+ 
Sbjct: 64  VGDSVSEGSVLVMLEPAGASAAAPAPAAAAAPSA------PAPAAAAPAPAAPAAPAPAA 117

Query: 313 GPASIST 293
            PA   T
Sbjct: 118 APAGAGT 124

>ref|NP_572244.1| CG15778-PA [Drosophila melanogaster] gi|7290612|gb|AAF46061.1|
           CG15778-PA [Drosophila melanogaster]
          Length = 310

 Score = 38.5 bits (88), Expect = 0.046
 Identities = 20/53 (37%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
 Frame = -1

Query: 451 EPRQQEHQPPSSARALAPPLGVGVKHPAPQTAAPAAEPDAAPAPSRG-PASIS 296
           EP  +E +P   A   APP  V    P P+  APA  P+A   P  G P ++S
Sbjct: 102 EPEPEEPEPEPEATTPAPPEDVDEPEPEPEAPAPAPAPEAPAGPPPGVPVTVS 154



EST assemble image


clone accession position
1 HCL065a09_r AV643174 1 452
2 HCL002b08_r AV639633 94 499




Chlamydomonas reinhardtii
Kazusa DNA Research Institute