KCC002202A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002202A_C01 KCC002202A_c01
ctgcgcagGTCGCTGTCGTTCTATCGTAGCTCCATATACCTTGTGACAGGACTACGCGTA
CTCTAAACTGCAACTCCCGAGCACTTCCATCGCGACCCCTCACCTTCTGTGCGATTAGGC
CCCCTTCTGCTTCAACATCATCTAGGCTTTCCCGAGAGGGCCAAAGCTTTTGGAAAGATG
GAGCGCGTGATCGGGCTTGTGAATAAGTTGCAGCAAATTTGCACGTCTCTTGGTGACAAT
GCGCTGAGCCCTCAAAGCATCCTCTGGAACCGCCTGCCAACCATTGTGGTGGTCGGAGGC
CAGAGTTCGGGCAAGTCATCGGTGCTCGAGGCGGTGGTGGGCAGGGATTTCCTGCCTCGC
GGCACGGGTATTGTCACCCGTCGCCCGCTGGTGCTCCAGCTCGTGAAGACCGACGACCCC
AACGCGGTCGACTATGGCGAGTTCGCCCACGCGCCCGGGCGCAAGTTCACGAACTTCGAC
GATATCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002202A_C01 KCC002202A_c01
         (488 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM61645.1| dynamin, putative [Arabidopsis thaliana]               128  3e-29
ref|NP_172936.1| dynamin -related [Arabidopsis thaliana] gi|1199...   128  3e-29
gb|AAF79238.1|AC006917_23 F10B6.23 [Arabidopsis thaliana]             128  3e-29
gb|AAM65743.1| dynamin-like protein [Arabidopsis thaliana]            126  2e-28
ref|NP_568602.3| dynamin-related protein (pir||S59558) [Arabidop...   126  2e-28

>gb|AAM61645.1| dynamin, putative [Arabidopsis thaliana]
          Length = 614

 Score =  128 bits (322), Expect = 3e-29
 Identities = 65/100 (65%), Positives = 79/100 (79%)
 Frame = +1

Query: 178 MERVIGLVNKLQQICTSLGDNALSPQSILWNRLPTIVVVGGQSSGKSSVLEAVVGRDFLP 357
           M+ +IGL+NK+Q+ CT LGD+     S LW  LPT+ VVGGQSSGKSSVLE+VVGRDFLP
Sbjct: 4   MKSLIGLINKIQRACTVLGDHGGEGMS-LWEALPTVAVVGGQSSGKSSVLESVVGRDFLP 62

Query: 358 RGTGIVTRRPLVLQLVKTDDPNAVDYGEFAHAPGRKFTNF 477
           RG+GIVTRRPLVLQL KT+D    +Y EF HAP ++F +F
Sbjct: 63  RGSGIVTRRPLVLQLHKTED-GTTEYAEFLHAPKKRFADF 101

>ref|NP_172936.1| dynamin -related [Arabidopsis thaliana] gi|11991506|emb|CAC19656.1|
           dynamin-like protein DLP1 [Arabidopsis thaliana]
           gi|14532662|gb|AAK64059.1| putative dynamin protein
           [Arabidopsis thaliana] gi|23297723|gb|AAN12911.1|
           putative dynamin protein [Arabidopsis thaliana]
          Length = 614

 Score =  128 bits (322), Expect = 3e-29
 Identities = 65/100 (65%), Positives = 79/100 (79%)
 Frame = +1

Query: 178 MERVIGLVNKLQQICTSLGDNALSPQSILWNRLPTIVVVGGQSSGKSSVLEAVVGRDFLP 357
           M+ +IGL+NK+Q+ CT LGD+     S LW  LPT+ VVGGQSSGKSSVLE+VVGRDFLP
Sbjct: 4   MKSLIGLINKIQRACTVLGDHGGEGMS-LWEALPTVAVVGGQSSGKSSVLESVVGRDFLP 62

Query: 358 RGTGIVTRRPLVLQLVKTDDPNAVDYGEFAHAPGRKFTNF 477
           RG+GIVTRRPLVLQL KT+D    +Y EF HAP ++F +F
Sbjct: 63  RGSGIVTRRPLVLQLHKTED-GTTEYAEFLHAPKKRFADF 101

>gb|AAF79238.1|AC006917_23 F10B6.23 [Arabidopsis thaliana]
          Length = 749

 Score =  128 bits (322), Expect = 3e-29
 Identities = 65/100 (65%), Positives = 79/100 (79%)
 Frame = +1

Query: 178 MERVIGLVNKLQQICTSLGDNALSPQSILWNRLPTIVVVGGQSSGKSSVLEAVVGRDFLP 357
           M+ +IGL+NK+Q+ CT LGD+     S LW  LPT+ VVGGQSSGKSSVLE+VVGRDFLP
Sbjct: 4   MKSLIGLINKIQRACTVLGDHGGEGMS-LWEALPTVAVVGGQSSGKSSVLESVVGRDFLP 62

Query: 358 RGTGIVTRRPLVLQLVKTDDPNAVDYGEFAHAPGRKFTNF 477
           RG+GIVTRRPLVLQL KT+D    +Y EF HAP ++F +F
Sbjct: 63  RGSGIVTRRPLVLQLHKTED-GTTEYAEFLHAPKKRFADF 101

>gb|AAM65743.1| dynamin-like protein [Arabidopsis thaliana]
          Length = 429

 Score =  126 bits (316), Expect = 2e-28
 Identities = 65/101 (64%), Positives = 78/101 (76%), Gaps = 1/101 (0%)
 Frame = +1

Query: 178 MERVIGLVNKLQQICTSLGDNA-LSPQSILWNRLPTIVVVGGQSSGKSSVLEAVVGRDFL 354
           ME +I LVNK+Q+ CT+LGD+   S    LW+ LP I VVGGQSSGKSSVLE++VG+DFL
Sbjct: 1   MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60

Query: 355 PRGTGIVTRRPLVLQLVKTDDPNAVDYGEFAHAPGRKFTNF 477
           PRG+GIVTRRPLVLQL K DD    +Y EF H P +KFT+F
Sbjct: 61  PRGSGIVTRRPLVLQLQKIDD-GTREYAEFLHLPRKKFTDF 100

>ref|NP_568602.3| dynamin-related protein (pir||S59558) [Arabidopsis thaliana]
          Length = 429

 Score =  126 bits (316), Expect = 2e-28
 Identities = 65/101 (64%), Positives = 78/101 (76%), Gaps = 1/101 (0%)
 Frame = +1

Query: 178 MERVIGLVNKLQQICTSLGDNA-LSPQSILWNRLPTIVVVGGQSSGKSSVLEAVVGRDFL 354
           ME +I LVNK+Q+ CT+LGD+   S    LW+ LP I VVGGQSSGKSSVLE++VG+DFL
Sbjct: 1   MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60

Query: 355 PRGTGIVTRRPLVLQLVKTDDPNAVDYGEFAHAPGRKFTNF 477
           PRG+GIVTRRPLVLQL K DD    +Y EF H P +KFT+F
Sbjct: 61  PRGSGIVTRRPLVLQLQKIDD-GTREYAEFLHLPRKKFTDF 100



EST assemble image


clone accession position
1 LCL047c03_r AV628797 1 251
2 LCL029b02_r AV627590 9 471
3 LCL080g02_r AV630559 10 372
4 HCL090b08_r AV644533 18 247
5 HCL002b05_r AV639632 26 488
6 LCL064h12_r AV629734 47 259
7 MXL045h06_r BP095691 49 483




Chlamydomonas reinhardtii
Kazusa DNA Research Institute