KCC002197A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002197A_C01 KCC002197A_c01
gCAAACATTTAGGATTCCCACCTACACTCTGTCTATACGAACCACGTCGGGTCAAACTTA
CACACGCTCGGCGAAGAAGGGAAGCTGAAGTTGCCGGGCATCGTCGCCTTCTTGAGCTAG
CGCCCAGAACCTCCTGTTCGCGCATTGAATCAATACGTGCGCTTTCCATATTTTGCGTGG
AAACTGAACAGACGCTGGCACTTACCGATTCCAGCTGGCCTCCGACACCCTGAGCCAAGG
TGCTAGTAATTTTTAGGCGTTGTCACACTCGCCGAGATGGTGCAACCAGTCTCGGTCCTC
ACGCCAGGCGTGCAAAGTGGACTTGGTGGACTAGGTGCTTCGCGTCCTGGGGCCTCCCAG
GCGTGGCCGCGTCGACCTGCTGTTCTGAGTACATTCCTGGGCACCTCCATGCTGTGGCGT
CGTGCGGCTTCTTCGACGGGTGGCCATGTGGCGCAGCATGTATGCTCGGCGTCGTCCAAG
TCGGGGGGCACAGTCAAGATAACCCGGCGGCGTGGTTCAGGCCACAGCAGCGGTGGCACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002197A_C01 KCC002197A_c01
         (540 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_294662.1| hypothetical protein [Deinococcus radiodurans] ...    39  0.057
dbj|BAC84380.1| hypothetical protein [Oryza sativa (japonica cul...    38  0.075
ref|XP_324141.1| hypothetical protein [Neurospora crassa] gi|254...    37  0.22
gb|AAM47592.1| putative glucosyl transferase [Sorghum bicolor]         36  0.28
dbj|BAB40771.1| chitinase-related protein 1 [Bombyx mori]              34  1.1

>ref|NP_294662.1| hypothetical protein [Deinococcus radiodurans]
           gi|7472991|pir||H75457 hypothetical protein -
           Deinococcus radiodurans (strain R1)
           gi|6458663|gb|AAF10516.1|AE001946_8 hypothetical protein
           [Deinococcus radiodurans]
          Length = 395

 Score = 38.5 bits (88), Expect = 0.057
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = -2

Query: 539 VPPLLWPEPRRRVILTVPPDLDDAEHTCCA--TWPPVEEAARRHSMEVPRNVLRTAGRRG 366
           +PP + PEPRR      PP   +   T  +  T PPV +A    +        +    + 
Sbjct: 106 IPPPVLPEPRRMPAPPTPPRPVEETTTAASPITQPPVTQAPATQTPTPQTPAAQAPATQP 165

Query: 365 HAWEAPGREAPSPPSPLCTPGVRTET 288
            A  AP   AP+ P+P  TP   T T
Sbjct: 166 PATPAPEPAAPAEPAPATTPEPATPT 191

>dbj|BAC84380.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 315

 Score = 38.1 bits (87), Expect = 0.075
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
 Frame = +1

Query: 313 QSGLGGLGASRPGASQAWPRRPAVLSTFLGTSMLWRRAASSTGGHVA-----------QH 459
           + G GG+GA R G   AW R   V ++ +G    WRR      G  A           +H
Sbjct: 98  RGGGGGVGARRRGGPAAWGRGCGVGASGVGAQ--WRRRGQRRAGTAAASGPSGVRARWRH 155

Query: 460 VCSASSKSGGTVKITRRRGSG 522
             +A+ +SGG V   R R SG
Sbjct: 156 ATAAAWRSGGVVSSRRWRPSG 176

>ref|XP_324141.1| hypothetical protein [Neurospora crassa] gi|25466261|pir||T51890
            related to Nup98-Nup96 precursor [imported] - Neurospora
            crassa gi|28921901|gb|EAA31174.1| hypothetical protein
            [Neurospora crassa]
          Length = 1844

 Score = 36.6 bits (83), Expect = 0.22
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 446  WPPVEEAARRHSMEVPRNVLRTAGRRGHAWEAPGREAPSPPSPLCTPGVRTETGCTISAS 267
            W  + +A+ R    V RN+LR     G AWEA    +P+P  P+   G    T   +  S
Sbjct: 1202 WTQILQASVRAPRTVDRNLLREQNESGEAWEAKESGSPAPREPVVHEGQGFATSIDLMKS 1261

Query: 266  V 264
            +
Sbjct: 1262 L 1262

>gb|AAM47592.1| putative glucosyl transferase [Sorghum bicolor]
          Length = 449

 Score = 36.2 bits (82), Expect = 0.28
 Identities = 24/76 (31%), Positives = 32/76 (41%), Gaps = 12/76 (15%)
 Frame = -2

Query: 521 PEPRRRVI---LTVPPDLDDAEHTCCATWPPVEEAARRH---------SMEVPRNVLRTA 378
           PE RR +I   +T  P L  AE   C T+  +E  A  H          +E P++    +
Sbjct: 190 PESRRAMIQSAITTIPTLALAETIVCNTFQEIESVALAHLPIPAVAIGPLEAPKSTSSAS 249

Query: 377 GRRGHAWEAPGREAPS 330
              GH W   G  APS
Sbjct: 250 AATGHFWAQDGLPAPS 265

>dbj|BAB40771.1| chitinase-related protein 1 [Bombyx mori]
          Length = 1080

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 27/76 (35%), Positives = 32/76 (41%)
 Frame = -2

Query: 482  DLDDAEHTCCATWPPVEEAARRHSMEVPRNVLRTAGRRGHAWEAPGREAPSPPSPLCTPG 303
            DLDD+ + CCA                P  +LR AGR      A GR  PSPP+   TP 
Sbjct: 977  DLDDSSNRCCAE---------------PYPLLRAAGR------ALGRSVPSPPT---TPC 1012

Query: 302  VRTETGCTISASVTTP 255
             R     T +   TTP
Sbjct: 1013 ERPPEPVTPAPPTTTP 1028



EST assemble image


clone accession position
1 HCL002a07_r AV639622 1 535
2 HCL077f08_r AV643881 2 392
3 HCL085h07_r AV644304 33 541




Chlamydomonas reinhardtii
Kazusa DNA Research Institute