KCC002194A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002194A_C01 KCC002194A_c01
cacctgcgcctcttccttcttcctagcACTGAACTGGCACTAAAACGTGAAGGCTTGAAT
CTGACGGCACCCGCTTGCATCGGGCAATTTCTCGCCGCGCCTTATGGACACGATGGCTCC
CTCTCGAGATGATATTTCGCAGTCGAGGGCCTCGTGTTTGGTGGCGCCACGCCCGCGTAA
AGGCAGCGCATGTAGCGCTGGCAGCGCCAGTGGCCGCCAAGTAGAAGCGAGCCAGCCGGA
GCAGGCCAGTCAGCGCTCGCGGCTCACTTCGAGCTTGCAAGCGATGGCGACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002194A_C01 KCC002194A_c01
         (292 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_330953.1| predicted protein [Neurospora crassa] gi|289236...    35  0.38
dbj|BAC79205.1| hypothetical protein [Oryza sativa (japonica cul...    32  1.9
ref|NP_611239.1| CG10936-PA [Drosophila melanogaster] gi|2465449...    32  3.2
ref|ZP_00031819.1| COG1034: NADH dehydrogenase/NADH:ubiquinone o...    32  3.2
ref|NP_758552.1| putative regulatory protein [Pseudomonas resino...    32  3.2

>ref|XP_330953.1| predicted protein [Neurospora crassa] gi|28923640|gb|EAA32811.1|
           predicted protein [Neurospora crassa]
          Length = 553

 Score = 34.7 bits (78), Expect = 0.38
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +2

Query: 95  PRLMDTMAPSRDDISQSRASCLVAPRPRKGSACSAGSASGRQVEASQPEQASQRSRLTSS 274
           P +  T A S  D S   AS   +P P  G+  +AGS +  +  A+    ++ R+R+ +S
Sbjct: 407 PTVKCTPAVSSADASSPAASASASPSPTSGARTAAGSFANNETAATSKSPSAIRARIQNS 466

Query: 275 LQAMA 289
            Q +A
Sbjct: 467 DQNVA 471

>dbj|BAC79205.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 187

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 24/69 (34%), Positives = 29/69 (41%), Gaps = 21/69 (30%)
 Frame = -1

Query: 175 RAWRHQTRGPRLRNIIS-------RGSHRVHKARR--------------EIARCKRVPSD 59
           RAWR   R PRL + +        R   R H+ RR              +I  C RVPS 
Sbjct: 107 RAWRRDNRRPRLLHPLHLCCWWCRRRQRRCHRRRRCCQWEKMPLCCRWEKIPLCCRVPSS 166

Query: 58  SSLHVLVPV 32
           S   VLVP+
Sbjct: 167 SKEVVLVPI 175

>ref|NP_611239.1| CG10936-PA [Drosophila melanogaster] gi|24654491|ref|NP_725702.1|
           CG10936-PB [Drosophila melanogaster]
           gi|21064441|gb|AAM29450.1| RE29777p [Drosophila
           melanogaster] gi|21627061|gb|AAM68482.1| CG10936-PA
           [Drosophila melanogaster] gi|21627062|gb|AAF57823.2|
           CG10936-PB [Drosophila melanogaster]
          Length = 1524

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 22/74 (29%), Positives = 29/74 (38%)
 Frame = +2

Query: 71  PLASGNFSPRLMDTMAPSRDDISQSRASCLVAPRPRKGSACSAGSASGRQVEASQPEQAS 250
           P  +G FSP    T AP    +         A RPR      + +AS      S  E +S
Sbjct: 208 PFGNGGFSPTRTRTQAPVSALVENPATPAATAFRPRNRYQPGSSTASTTTTTTSSAEVSS 267

Query: 251 QRSRLTSSLQAMAT 292
           +R     S +A AT
Sbjct: 268 KRYNRFGSNRAKAT 281

>ref|ZP_00031819.1| COG1034: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD
           subunit (chain G) [Burkholderia fungorum]
          Length = 246

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 15/41 (36%), Positives = 24/41 (57%)
 Frame = +2

Query: 155 CLVAPRPRKGSACSAGSASGRQVEASQPEQASQRSRLTSSL 277
           C V  + R GSAC+  +A G++VE++  E  ++R  L   L
Sbjct: 61  CTVKVKGRPGSACTMHAADGQKVESNTDELNAERKMLLQML 101

>ref|NP_758552.1| putative regulatory protein [Pseudomonas resinovorans]
           gi|26106090|dbj|BAC41530.1| putative regulatory protein
           [Pseudomonas resinovorans]
          Length = 330

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 216 RPLALPALHALPLRGRGATKHEALDCEISSREGAIVSIRRGEKLPDASGCRQI 58
           RP     L  +PLRGR + + + L  E+ + + A++S  R  +L    GC Q+
Sbjct: 76  RPFTDFVLMQMPLRGRASIECDGLALELEAGQVAVLSPNRQARLVWHRGCEQL 128



EST assemble image


clone accession position
1 MXL006e09_r BP093310 1 155
2 HCL001h03_r AV639609 28 292
3 MXL006a05_r BP093276 39 283




Chlamydomonas reinhardtii
Kazusa DNA Research Institute