KCC002181A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002181A_C01 KCC002181A_c01
gagagagaactagtctcgagttttttttttttttttttgacgttctgtttgCTTACATGC
ACACGTCCCCGTTCCCGTAACATAACACGCGTACACCACTCTGTACCTATCCTCCTGGTG
CGTTGACAGTTCCCTGGATTAAGACACAACACGTCCTGTTCCTTACCCCAAGGTCCTGCC
GACAACTTCACGGCCGGAAAACGTCCGACACGTGTGTCGACCAACACCTGCTGCTACCTG
ATTCCCTTCATCCACTGGGCCTCAGGGCCTCAATCCTGGCCCAGGCGCACGCGATGCAAC
CCCATTCCACGTGTCCATGACCAAACCTCTGCCCTTGCCGCTACGACTTCACTGCTGCTC
GCCACAGTCATTGCACTTATGTCGCTAAGCCTCCCACGGGCGTGCGAACAACACCGAAGC
GCCGCGCTTGCTGGTGCCGGGCCGTCCGCCACGCCAGCTCCTCCATGCTCCATCAAGAGC
ACTCCCTGGCATCACACCACCAGACGGCAGTGCTAAGAACGctccagctccgagctgctc
caggggctgccgccacaatgctccgccatccgcagacagtcgagcgcttatttgaatcct
c


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002181A_C01 KCC002181A_c01
         (601 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_344036.1| similar to basic proline-rich protein [Rattus n...    42  0.005
dbj|BAC98229.1| mKIAA1668 protein [Mus musculus]                       42  0.009
ref|NP_862417.1| putative proline-rich extensin-like protein [Mi...    42  0.009
sp|Q8BGT6|MI13_MOUSE Molecule interacting with Rab13 (MIRab13) g...    42  0.009
ref|ZP_00139850.1| COG3280: Maltooligosyl trehalose synthase [Ps...    41  0.011

>ref|XP_344036.1| similar to basic proline-rich protein [Rattus norvegicus]
          Length = 757

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 43/145 (29%), Positives = 52/145 (35%), Gaps = 7/145 (4%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMT-KP 328
           R  P P +L  T  P  +R  C P+P    +  S GP    P PG    TP    +   P
Sbjct: 489 RYTPSPGLLRGTPSPGPLR--CTPSPGPLRYTPSPGPLRCTPSPGPLRGTPSPGPLRYTP 546

Query: 329 LPLPLRLH------CCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPG 490
            P PLR         C+P    L    S G    T +P  L     P  L   PS     
Sbjct: 547 SPGPLRCTPSPGPLRCTPSPGPLRYTPSPGPLRCTPSPGPLRCTPSPGPLRGTPSPGPLR 606

Query: 491 ITPPDGSAKNAPAPSCSRGCRHNAP 565
            TP  G  +  P+P   RG     P
Sbjct: 607 CTPSPGPVRYTPSPGLLRGTPSPGP 631

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 39/127 (30%), Positives = 48/127 (37%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMTKPL 331
           R  P P  L  T  P  +R  C P+P    +  S GP    P PG    T        P 
Sbjct: 399 RYTPSPGPLRYTPSPGPLR--CTPSPGPLRYTPSPGPLRYTPSPGPLRCT--------PS 448

Query: 332 PLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPDGS 511
           P PLR   C+P    L    S G    T +P  L     P  + + PS  L   TP  G 
Sbjct: 449 PGPLR---CTPSPGPLRCTPSPGPLRGTPSPGPLRCTPSPGPVRYTPSPGLLRGTPSPGP 505

Query: 512 AKNAPAP 532
            +  P+P
Sbjct: 506 LRCTPSP 512

 Score = 40.0 bits (92), Expect = 0.025
 Identities = 41/129 (31%), Positives = 52/129 (39%), Gaps = 2/129 (1%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGL--NPGPGARDATPFHVSMTK 325
           R  P P  L  T  P  +R  CRP+P    +  S GP     NPGP    A+P  +  T 
Sbjct: 273 RYTPSPGPLRCTPSPGPLR--CRPSPGPLRYTPSPGPLRYTPNPGPLRCTASPGPLRYT- 329

Query: 326 PLPLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPD 505
           P P PLR   C+P    +    S G    T +P  L     P  L + PS       P  
Sbjct: 330 PSPGPLR---CTPSPGPVRCRPSPGPLRYTPSPGPLRGTPSPGPLRYRPSPGPLRYRPSP 386

Query: 506 GSAKNAPAP 532
           G  +  P+P
Sbjct: 387 GPLRYTPSP 395

 Score = 37.7 bits (86), Expect = 0.12
 Identities = 43/140 (30%), Positives = 54/140 (37%), Gaps = 1/140 (0%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMT-KP 328
           R  P P  L  T  P  +R+   P+P    +  S GP    P PG   +TP    +   P
Sbjct: 165 RYTPSPGPLRYTPSPGPLRYT--PSPGLLRYTPSPGPLRYTPSPGPLRSTPSPGPVRYTP 222

Query: 329 LPLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPDG 508
            P PLR +  SP  L      S G    T +P  L     P  L   PS      TP  G
Sbjct: 223 SPGPLR-YTPSPGPLRYT--PSPGPLRGTPSPGPLRYTPSPGPLRCTPSPGPLRYTPSPG 279

Query: 509 SAKNAPAPSCSRGCRHNAPP 568
             +  P+P   R CR +  P
Sbjct: 280 PLRCTPSPGPLR-CRPSPGP 298

 Score = 37.4 bits (85), Expect = 0.16
 Identities = 39/128 (30%), Positives = 47/128 (36%), Gaps = 1/128 (0%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMT-KP 328
           R  P P  L  T  P  +R  C P+P    +  S G     P PG    TP    +   P
Sbjct: 588 RCTPSPGPLRGTPSPGPLR--CTPSPGPVRYTPSPGLLRGTPSPGPLRCTPSPGPLRYTP 645

Query: 329 LPLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPDG 508
            P PLR   C+P    L    S G    T +P  L     P  L   PS      TP  G
Sbjct: 646 SPGPLR---CTPSPGPLRYTPSPGPLRYTPSPGPLRYTPSPGPLRGTPSPGPLRYTPSPG 702

Query: 509 SAKNAPAP 532
             +  P+P
Sbjct: 703 PLRGTPSP 710

 Score = 36.2 bits (82), Expect = 0.36
 Identities = 38/127 (29%), Positives = 46/127 (35%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMTKPL 331
           R  P P  L     P  +R+  RP+P    +  S GP    P PG    T        P 
Sbjct: 363 RGTPSPGPLRYRPSPGPLRY--RPSPGPLRYTPSPGPLRYTPSPGPLRYT--------PS 412

Query: 332 PLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPDGS 511
           P PLR   C+P    L    S G    T +P  L     P  L   PS      TP  G 
Sbjct: 413 PGPLR---CTPSPGPLRYTPSPGPLRYTPSPGPLRCTPSPGPLRCTPSPGPLRCTPSPGP 469

Query: 512 AKNAPAP 532
            +  P+P
Sbjct: 470 LRGTPSP 476

 Score = 35.8 bits (81), Expect = 0.47
 Identities = 40/138 (28%), Positives = 49/138 (34%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMTKPL 331
           R  P P  L  T  P  +R  C  +P    +  S GP    P PG    T        P 
Sbjct: 129 RYTPSPGPLRYTPNPGPLR--CTASPGPLRYTPSPGPLRYTPSPGPLRYT--------PS 178

Query: 332 PLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPDGS 511
           P PLR +  SP  L      S G    T +P  L     P  + + PS      TP  G 
Sbjct: 179 PGPLR-YTPSPGLLRYT--PSPGPLRYTPSPGPLRSTPSPGPVRYTPSPGPLRYTPSPGP 235

Query: 512 AKNAPAPSCSRGCRHNAP 565
            +  P+P   RG     P
Sbjct: 236 LRYTPSPGPLRGTPSPGP 253

 Score = 35.8 bits (81), Expect = 0.47
 Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 1/128 (0%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMT-KP 328
           R  P P  L  T  P  +R  C P+P    +  S GP    P PG     P    +   P
Sbjct: 246 RGTPSPGPLRYTPSPGPLR--CTPSPGPLRYTPSPGPLRCTPSPGPLRCRPSPGPLRYTP 303

Query: 329 LPLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPDG 508
            P PLR    +P    L   AS G    T +P  L     P  +   PS      TP  G
Sbjct: 304 SPGPLRY---TPNPGPLRCTASPGPLRYTPSPGPLRCTPSPGPVRCRPSPGPLRYTPSPG 360

Query: 509 SAKNAPAP 532
             +  P+P
Sbjct: 361 PLRGTPSP 368

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 37/128 (28%), Positives = 44/128 (33%), Gaps = 1/128 (0%)
 Frame = +2

Query: 152 RPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMT-KP 328
           R  P P  L  T  P  +R  C P+P    +  S GP    P PG    TP    +   P
Sbjct: 633 RCTPSPGPLRYTPSPGPLR--CTPSPGPLRYTPSPGPLRYTPSPGPLRYTPSPGPLRGTP 690

Query: 329 LPLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPDG 508
            P PLR               S G    T +P  L     P  L   PS      TP  G
Sbjct: 691 SPGPLRYT------------PSPGPLRGTPSPGPLRYTPSPGPLRCTPSPGPLRCTPSPG 738

Query: 509 SAKNAPAP 532
             +  P+P
Sbjct: 739 PLRCTPSP 746

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 42/139 (30%), Positives = 52/139 (37%), Gaps = 10/139 (7%)
 Frame = +2

Query: 146 TTRPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMT- 322
           TT     P  L  T  P  +R  C P+P    +  S GP    P PG    TP    +  
Sbjct: 37  TTEIYTSPGPLRCTPSPGPLR--CTPSPGPLRYTPSPGPLRYTPSPGPLRYTPSPGPLRY 94

Query: 323 KPLPLPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPS------RAL 484
            P P PLR +  SP  L      S G    T +P  L     P  L + P+       A 
Sbjct: 95  TPSPGPLR-YTPSPGPLRYT--PSPGPLRYTPSPGPLRYTPSPGPLRYTPNPGPLRCTAS 151

Query: 485 PG---ITPPDGSAKNAPAP 532
           PG    TP  G  +  P+P
Sbjct: 152 PGPLRYTPSPGPLRYTPSP 170

>dbj|BAC98229.1| mKIAA1668 protein [Mus musculus]
          Length = 883

 Score = 41.6 bits (96), Expect = 0.009
 Identities = 40/144 (27%), Positives = 52/144 (35%), Gaps = 2/144 (1%)
 Frame = +2

Query: 155 PVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMTKPLP 334
           PVP P + P    P     V  P PA    PS   P+ L+P  G    TP     TK  P
Sbjct: 449 PVPSPSLAPPVPSPSPAPPVPSPAPA----PSEATPKSLHPWYG---ITPTSSPKTKKRP 501

Query: 335 LPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSR--ALPGITPPDG 508
            P R    SP ++H  R +     + T +P L V         H  +     P   P   
Sbjct: 502 AP-RAPSASPLAIHASRLSHSEPPSATPSPALSVESLSSESSSHTANAEPLEPPAVPKSS 560

Query: 509 SAKNAPAPSCSRGCRHNAPPSADS 580
           S      P       ++  PSA+S
Sbjct: 561 SDPAVHVPGTPGTSGNSVTPSANS 584

>ref|NP_862417.1| putative proline-rich extensin-like protein [Micrococcus sp. 28]
           gi|18025405|gb|AAK62513.1| putative proline-rich
           extensin-like protein [Micrococcus sp. 28]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.009
 Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
 Frame = +2

Query: 218 RPTPAAT*FPS-STGPQGLNPGPGARDATPFHVSMTKPLPLPLRLHCCSPQSLHLCR*AS 394
           +P P++   PS S+G   L PGP A  + P                  +P S   CR  +
Sbjct: 104 QPVPSSG--PSRSSGAGALGPGPSAATSAP-----------------AAPDSPSRCRPRA 144

Query: 395 HGRANNTEAPRLLVPGRPPRQLLHAPSRALPGITPPDGSAKNAPAPSCSR--------GC 550
           H R  +   P  LVP  PP++ L     A PG   P  +A+ +  P  +R         C
Sbjct: 145 HWRPPHARPPSPLVPRWPPQRALGRTRDARPGHRCPTWAARPSRRPRPARRAPATPPPPC 204

Query: 551 RHNAPP 568
            H  PP
Sbjct: 205 AHGQPP 210

>sp|Q8BGT6|MI13_MOUSE Molecule interacting with Rab13 (MIRab13)
           gi|26345642|dbj|BAC36472.1| unnamed protein product [Mus
           musculus] gi|26346076|dbj|BAC36689.1| unnamed protein
           product [Mus musculus]
          Length = 513

 Score = 41.6 bits (96), Expect = 0.009
 Identities = 40/144 (27%), Positives = 52/144 (35%), Gaps = 2/144 (1%)
 Frame = +2

Query: 155 PVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMTKPLP 334
           PVP P + P    P     V  P PA    PS   P+ L+P  G    TP     TK  P
Sbjct: 79  PVPSPSLAPPVPSPSPAPPVPSPAPA----PSEATPKSLHPWYG---ITPTSSPKTKKRP 131

Query: 335 LPLRLHCCSPQSLHLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSR--ALPGITPPDG 508
            P R    SP ++H  R +     + T +P L V         H  +     P   P   
Sbjct: 132 AP-RAPSASPLAIHASRLSHSEPPSATPSPALSVESLSSESSSHTANAEPLEPPAVPKSS 190

Query: 509 SAKNAPAPSCSRGCRHNAPPSADS 580
           S      P       ++  PSA+S
Sbjct: 191 SDPAVHVPGTPGTSGNSVTPSANS 214

>ref|ZP_00139850.1| COG3280: Maltooligosyl trehalose synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 597

 Score = 41.2 bits (95), Expect = 0.011
 Identities = 41/117 (35%), Positives = 46/117 (39%), Gaps = 2/117 (1%)
 Frame = +2

Query: 143 DTTRPVPYPKVLPTTSRPENVRHVCRPTPAAT*FPSSTGPQGLNPGPGARDATPFHVSMT 322
           D   PVP  + LP    P   R  CR  P      SS  P G  P PG R A P H +  
Sbjct: 382 DAAGPVPRRR-LPA---PGGQRRACRAGPGLRPAQSSRLPAGGGPAPGLRPARPRHAAAG 437

Query: 323 KPLPLPLRLHCCSPQSL--HLCR*ASHGRANNTEAPRLLVPGRPPRQLLHAPSRALP 487
               L   L   + +SL  HL R   H  A    AP    P R  R+L   P  ALP
Sbjct: 438 AGRGLGRHLPAAAAESLRMHLQRPVFHHAAAQRRAPE---PVRSARRLSRQP--ALP 489



EST assemble image


clone accession position
1 LC039g11_r AV621699 1 486
2 HC098c02_r AV639348 52 425
3 HCL091c02_r AV644611 197 601




Chlamydomonas reinhardtii
Kazusa DNA Research Institute