KCC002176A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC002176A_C01 KCC002176A_c01
taGCCAAGCGTACTGAATTAAGCATCAGGCGTAGCAGAACCACACCGATAGTGTCACGAG
AGAATGTCGTCTGCTCTCCGTCGCCTTTCGCAGCAGGCCCCGCGTCTGACGCGTGGCCTG
AAGACTGGCAACGTCACTAAGGGTGGTGCTGAGAAGTATAGCCACGAGGAGGTCGTCTAT
GGCGATGGCCACCACGGTCTGCGCAAGGGCTACACCTACGACTTCGAGCACGGGCCCCAC
TACCTGCAGCCCGAGAAGATTCCCAACTTCTGGAGCAAGTTCTATGCGGGCACTGGCGCG
CTTTACGCCGAGGGCCTTGGCGTGCCCCTGTTCGCTGTCTGGTGGCAGCAGAGCAAGCTC
AAGGCGTAAACGCGCCTAGGAGCTATCACTGGTGTTGGGCTTGCACGGAAGCACCATAGT
GGTTTCTGGCGGGC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002176A_C01 KCC002176A_c01
(434 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00023787.1| COG0409: Hydrogenase maturation factor [Ralst... 40 0.006
ref|NP_473440.1| RIKEN cDNA 1110038F14 [Mus musculus] gi|1283523... 39 0.016
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil... 38 0.028
gb|AAP80623.1|AF475101_1 H-protein [Triticum aestivum] 37 0.048
ref|ZP_00141825.1| COG1200: RecG-like helicase [Pseudomonas aeru... 37 0.062
>ref|ZP_00023787.1| COG0409: Hydrogenase maturation factor [Ralstonia metallidurans]
Length = 528
Score = 40.4 bits (93), Expect = 0.006
Identities = 29/78 (37%), Positives = 35/78 (44%)
Frame = -2
Query: 319 QGPRRKARQCPHRTCSRSWESSRAAGSGARARSRRCSPCADRGGHRHRRPPRGYTSQHHP 140
+ PRR+AR P R +R GAR RSRR A HRH RP G + P
Sbjct: 69 RAPRREARPRPGGGRPRRHPQARVHCPGARGRSRRLRHRARGPRHRHDRPRGG---REDP 125
Query: 139 **RCQSSGHASDAGPAAK 86
C+ +GH G A K
Sbjct: 126 RAVCRDAGHDRRVGAAMK 143
>ref|NP_473440.1| RIKEN cDNA 1110038F14 [Mus musculus] gi|12835230|dbj|BAB23195.1|
unnamed protein product [Mus musculus]
gi|23468321|gb|AAH38324.1| RIKEN cDNA 1110038F14 [Mus
musculus]
Length = 160
Score = 38.9 bits (89), Expect = 0.016
Identities = 33/101 (32%), Positives = 46/101 (44%), Gaps = 4/101 (3%)
Frame = +3
Query: 78 PSPFAAGPASDAWPEDWQRH*GWC*EV*PRGGRLWRWPPR---SAQGLHLRLRA-RAPLP 245
P+P A P+++A E R WC E G + R P+ A G LR+ + PLP
Sbjct: 25 PAPDEAPPSAEAQAEQLARELAWCVEQLELGLKTQRPTPKQKEQAVGAIRTLRSEKTPLP 84
Query: 246 AAREDSQLLEQVLCGHWRALRRGPWRAPVRCLVAAEQAQGV 368
R+ L + L G +RA WR +R L AA + V
Sbjct: 85 RKRQ----LMRSLFGDYRAQMDAEWREALRALKAATHSAQV 121
>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
melanogaster]
Length = 1225
Score = 38.1 bits (87), Expect = 0.028
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ C+ S
Sbjct: 821 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSCPTTT---TPRSTTTTCT-S 876
Query: 341 GGSRASSR 364
G + + R
Sbjct: 877 GPTTTTPR 884
Score = 37.4 bits (85), Expect = 0.048
Identities = 20/58 (34%), Positives = 31/58 (52%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCS 334
+T ++S TT R+T TT+++ PTT +PR T+ S TPR+ PC+
Sbjct: 1013 STTKTSTCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRPTTT---TPRSTTTPCT 1067
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 405 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 460
Query: 341 GGSRASSR 364
G + + R
Sbjct: 461 GPTTTTPR 468
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 389 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 444
Query: 341 GGSRASSR 364
G + + R
Sbjct: 445 GPTTTTPR 452
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 709 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 764
Query: 341 GGSRASSR 364
G + + R
Sbjct: 765 GPTTTTPR 772
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 437 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 492
Query: 341 GGSRASSR 364
G + + R
Sbjct: 493 GPTTTTPR 500
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 661 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 716
Query: 341 GGSRASSR 364
G + + R
Sbjct: 717 GPTTTTPR 724
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 613 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 668
Query: 341 GGSRASSR 364
G + + R
Sbjct: 669 GPTTTTPR 676
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 501 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 556
Query: 341 GGSRASSR 364
G + + R
Sbjct: 557 GPTTTTPR 564
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 533 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 588
Query: 341 GGSRASSR 364
G + + R
Sbjct: 589 GPTTTTPR 596
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 581 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 636
Query: 341 GGSRASSR 364
G + + R
Sbjct: 637 GPTTTTPR 644
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 565 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 620
Query: 341 GGSRASSR 364
G + + R
Sbjct: 621 GPTTTTPR 628
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 741 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 796
Query: 341 GGSRASSR 364
G + + R
Sbjct: 797 GPTTTTPR 804
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 629 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 684
Query: 341 GGSRASSR 364
G + + R
Sbjct: 685 GPTTTTPR 692
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 453 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 508
Query: 341 GGSRASSR 364
G + + R
Sbjct: 509 GPTTTTPR 516
Score = 35.8 bits (81), Expect = 0.14
Identities = 22/67 (32%), Positives = 32/67 (46%)
Frame = +2
Query: 164 TRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLSG 343
T +S T R+T TTS++ PTT +PR T + R TPR+ C+ SG
Sbjct: 307 TTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTTCTRRPTTTTPRSTTTTCT-SG 365
Query: 344 GSRASSR 364
+ + R
Sbjct: 366 PTTTTPR 372
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 693 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 748
Query: 341 GGSRASSR 364
G + + R
Sbjct: 749 GPTTTTPR 756
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 485 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 540
Query: 341 GGSRASSR 364
G + + R
Sbjct: 541 GPTTTTPR 548
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 757 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 812
Query: 341 GGSRASSR 364
G + + R
Sbjct: 813 GPTTTTPR 820
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T +S + TT R+T TTS++GPTT +PR T+ S TPR+ S S
Sbjct: 773 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTS 828
Query: 341 GGSRASSR 364
G + + R
Sbjct: 829 GPTTTTPR 836
Score = 35.8 bits (81), Expect = 0.14
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALA--RFTPRALACPCS 334
+T +S + TT R+T TTS++GPTT +PR T+ S T + +CP +
Sbjct: 805 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSCPTT 864
Query: 335 LSGGSRASS 361
+ S ++
Sbjct: 865 TTPRSTTTT 873
Score = 35.4 bits (80), Expect = 0.18
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCS 334
+T +S + TT R+T TT ++GPTT +PR T+ S TPR+ C+
Sbjct: 853 STTTTSTSCPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSCPTTT---TPRSTTTTCT 907
Score = 34.7 bits (78), Expect = 0.31
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACP 328
+T ++S TT R+T TTS++ PTT +PR T+ S TPR+ P
Sbjct: 933 STTKTSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTTT---TPRSTTTP 985
Score = 33.9 bits (76), Expect = 0.53
Identities = 22/58 (37%), Positives = 30/58 (50%)
Frame = +2
Query: 191 TTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLSGGSRASSR 364
TT R+T TTS++GPTT +PR T+ S TPR+ S SG + + R
Sbjct: 383 TTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTSGPTTTTPR 436
Score = 33.5 bits (75), Expect = 0.69
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLS 340
+T ++ + TT R+T T ++ PTT +PR T+ S TPR+ PC +
Sbjct: 1045 STTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTTTSRPTTT---TPRSTTTPCPTT 1101
Query: 341 GGSRASSR 364
S + +R
Sbjct: 1102 TPSASPTR 1109
Score = 32.0 bits (71), Expect = 2.0
Identities = 21/58 (36%), Positives = 29/58 (49%)
Frame = +2
Query: 191 TTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLSGGSRASSR 364
TT R+T TT ++GPTT +PR T+ S TPR+ S SG + + R
Sbjct: 367 TTTTPRSTTTTCTSGPTTTTPRSTTTTSTSGPTTT---TPRS-TTTTSTSGPTTTTPR 420
Score = 32.0 bits (71), Expect = 2.0
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 164 TRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRA 316
T +S TT R+T TT+++ PTT +PR T+ S R TPR+
Sbjct: 275 TTTTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTTTSTCSP---TRTTPRS 322
Score = 31.2 bits (69), Expect = 3.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGAS 280
+T +S + TT R+T TT+++ PTT +PR T S
Sbjct: 949 STTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPSTS 988
Score = 30.8 bits (68), Expect = 4.5
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRA 316
+T S + TT R+T TTS++ PTT +PR ++ +S A TPR+
Sbjct: 981 STTTPSTSRPTTTTPRSTTTTSTSRPTTTTPR---STTKTSTCAPTTTTPRS 1029
Score = 30.8 bits (68), Expect = 4.5
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRA 316
+T + + TT R+T TT ++GPTT +PR ++ +S A TPR+
Sbjct: 901 STTTTCTSCPTTTTPRSTTTTCTSGPTTTTPR---STTKTSTCAPTTTTPRS 949
Score = 30.8 bits (68), Expect = 4.5
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Frame = +2
Query: 191 TTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALA--RFTPRALACPC 331
TT R+T TT+++ PTT +PR T ++ + + R T CPC
Sbjct: 1071 TTTTPRSTTTTTTSRPTTTTPRSTTTPCPTTTPSASPTRTTTTRRPCPC 1119
Score = 30.8 bits (68), Expect = 4.5
Identities = 21/58 (36%), Positives = 29/58 (49%)
Frame = +2
Query: 191 TTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACPCSLSGGSRASSR 364
TT R+T TT ++GPTT +PR T+ S TPR+ S SG + + R
Sbjct: 351 TTTTPRSTTTTCTSGPTTTTPRSTTTTCTSGPTTT---TPRS-TTTTSTSGPTTTTPR 404
Score = 30.8 bits (68), Expect = 4.5
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPR 313
+T +S + TT R+T TT+++ PTT +PR T ++ R TPR
Sbjct: 226 STTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRSTTT---TTTRRPTTTTPR 273
Score = 30.4 bits (67), Expect = 5.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFTPRALACP 328
+T ++ + TT R T TTS+ PT +PR T+ S TPR P
Sbjct: 290 STTTTTTSRPTTTTPRCTTTTSTCSPTRTTPRSTTTTSTSRPTTT---TPRCTTTP 342
Score = 30.0 bits (66), Expect = 7.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGAS 280
+T ++ TT R T TTS+ PTT +PR T+ S
Sbjct: 258 STTTTTTRRPTTTTPRCTTTTSTCAPTTTTPRSTTTTTTS 297
Score = 30.0 bits (66), Expect = 7.6
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +2
Query: 128 ATSLRVVLRSIATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGASSMRALARFT 307
+TS +T + + TT R+T TT ++ PTT +PR T+ S T
Sbjct: 858 STSCPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSCPTTTTPRSTTTTCTSCPTTT---T 914
Query: 308 PRALACPCSLSGGSRASSR 364
PR+ C+ SG + + R
Sbjct: 915 PRSTTTTCT-SGPTTTTPR 932
Score = 29.6 bits (65), Expect = 10.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 161 ATRRSSMAMATTVCARATPTTSSTGPTTCSPRRFPTSGAS 280
+T ++ + TT R+T T S++ PTT +PR T+ S
Sbjct: 965 STTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTS 1004
Score = 29.6 bits (65), Expect = 10.0
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +2
Query: 191 TTVCARATPTTSSTGPTTCSPRRFPTSGAS 280
TT R+T TTS++ PTT +PR T+ S
Sbjct: 220 TTTTPRSTTTTSTSRPTTTTPRSTTTTTTS 249
>gb|AAP80623.1|AF475101_1 H-protein [Triticum aestivum]
Length = 189
Score = 37.4 bits (85), Expect = 0.048
Identities = 23/64 (35%), Positives = 27/64 (41%), Gaps = 3/64 (4%)
Frame = -2
Query: 349 AATRQRTGARQGPRRKA---RQCPHRTCSRSWESSRAAGSGARARSRRCSPCADRGGHRH 179
A R R G GPRR+ R PHR R + S+ G G A+ DR H
Sbjct: 97 AEVRGRRGRLDGPRRRRGLRRHLPHRQLHRHLQDSQGRGGGPVAQPLGVXGAVDRRHHAA 156
Query: 178 RRPP 167
R PP
Sbjct: 157 RVPP 160
>ref|ZP_00141825.1| COG1200: RecG-like helicase [Pseudomonas aeruginosa UCBPP-PA14]
Length = 1004
Score = 37.0 bits (84), Expect = 0.062
Identities = 34/90 (37%), Positives = 39/90 (42%), Gaps = 6/90 (6%)
Frame = -2
Query: 334 RTGARQGPRRKA--RQCPHRTCSRSWESSRAAGSGARARSRRCSPCADRGGHRHRRP--- 170
R G PRR+A RQ R RA G+ RA+ R +P D G RHRRP
Sbjct: 16 RPGTTLRPRRRALPRQPTDPLGRREEARGRAGGADLRAQQERRAP--DASGRRHRRPGAE 73
Query: 169 -PRGYTSQHHP**RCQSSGHASDAGPAAKG 83
PR T HP G AG AA+G
Sbjct: 74 GPR--TGPGHP---RAGPGRQEPAGRAAEG 98
EST assemble image
|
|
|
|
|
|
clone |
accession |
position |
| 1 |
LC079d11_r |
AV624563 |
1 |
442 |
| 2 |
HC095a08_r |
AV639104 |
3 |
434 |
| 3 |
MX036e07_r |
BP087530 |
4 |
376 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute