Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002175A_C01 KCC002175A_c01
(247 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL79342.1|AC099402_6 Putative gypsy-type retrotransposon [Or... 34 0.69
gb|AAL58138.1|AC093093_11 putative gypsy-type retrotransposon [O... 34 0.69
gb|AAK84686.1| unknown [Mus musculus] 32 2.6
gb|AAN16920.1| seed peroxidase 2 [Setaria faberi] 32 2.6
ref|NP_506612.1| putative protein family member (5P85) [Caenorha... 31 4.5
>gb|AAL79342.1|AC099402_6 Putative gypsy-type retrotransposon [Oryza sativa]
gi|31431497|gb|AAP53270.1| putative gypsy-type
retrotransposon [Oryza sativa (japonica cultivar-group)]
Length = 584
Score = 33.9 bits (76), Expect = 0.69
Identities = 18/35 (51%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Frame = +1
Query: 142 LLQSLASIQRASPRTRWQNLPACPRSALTS-PRSP 243
+ QSL +I+R SP T WQN PA L PRSP
Sbjct: 526 MAQSLEAIKRLSPTTHWQNQPATLSCLLPKLPRSP 560
>gb|AAL58138.1|AC093093_11 putative gypsy-type retrotransposon [Oryza sativa (japonica
cultivar-group)]
Length = 554
Score = 33.9 bits (76), Expect = 0.69
Identities = 18/35 (51%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Frame = +1
Query: 142 LLQSLASIQRASPRTRWQNLPACPRSALTS-PRSP 243
+ QSL +I+R SP T WQN PA L PRSP
Sbjct: 496 MAQSLEAIKRLSPTTHWQNQPATLSCLLPKLPRSP 530
>gb|AAK84686.1| unknown [Mus musculus]
Length = 896
Score = 32.0 bits (71), Expect = 2.6
Identities = 24/71 (33%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
Frame = +3
Query: 30 RPGSFCTSPQTA----TLFTPAPRCPN*TPGLTNCILTQLLTASITRINSACVPANSLAE 197
+P S SPQTA T PA +C + +CI Q + T A +P+ E
Sbjct: 791 KPPSTLASPQTAPEIETSIAPAGKCSS----SPSCI-AQRQSVECTLSPGASLPSPDRRE 845
Query: 198 PPRVPSLGPHQ 230
PP +L PHQ
Sbjct: 846 PPLCRALNPHQ 856
>gb|AAN16920.1| seed peroxidase 2 [Setaria faberi]
Length = 273
Score = 32.0 bits (71), Expect = 2.6
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 16 YCEE-LGLAASALHRRRPRC-LRPRPGALTEPLGLLIAY*HNY*LLQSLASIQRASPRTR 189
YC +G A S RRR RC RPRPG+ T P + A+ + SPRTR
Sbjct: 223 YCGRCVGCAPSTTARRRSRCWTRPRPGSSTTPTS------------TTSATTRACSPRTR 270
>ref|NP_506612.1| putative protein family member (5P85) [Caenorhabditis elegans]
gi|7506653|pir||T24198 hypothetical protein R11H6.3 -
Caenorhabditis elegans gi|3879147|emb|CAB07647.1|
Hypothetical protein R11H6.3 [Caenorhabditis elegans]
Length = 387
Score = 31.2 bits (69), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 30 RPGSFCTSPQTATLFTPAPRCPN*TPGLTNCILTQLLTASITRINSACVPANSL 191
R GS CTS Q + + AP+CP + N + + S++R S +PA ++
Sbjct: 310 RRGSMCTSSQLS-INDEAPKCPFMSKSANNSVTRLSCSESVSRRGSIVLPATTI 362
