KCC002172A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002172A_C01 KCC002172A_c01
ccacactgttacgtttcatgcttCATTCGCTAGCACAGCTCTCCCGGTTCGGGCTGTCAA
CTGTCGCTCCCTACTCCGCACTCGCACCCAAGCTACGACCCTGTGGCCACTTGGCTCAAA
GCCACGAAGCTCTACAGTATGACATCGAATTCAGGCTCTCGCTTAAACGCCGCTGGACAA
CCCGACCGCGAGTTGCCCGGAGGGGAGCCGGAGAACTTTTCAGACCGCTGGGAGCGAGAA
TGGAGCGCAGGCGTGGGCAAGGGCCAGCGCTGGGACTGCTCGGCGCCCTCGCCCTCGCTC
GTGGACTTGCTGAAGAGCGGTAAAGTGAACGTCACGGGGCAACGCGTATTCGTGCCTGGC
TGCGGGCGCGGCTATGACCTTCCCGTCTTCCGGACGGCTGGCGCGGCGCAGGTTGTGGGG
CTGGAGCTGGCGCCCAGTGCGGTGCGGGAGGCGCAGGCCTACCTTGCAGAGCTGCAGCTG
CCGGCTGCGGACGCTGCTGCGATCGAGATGATTCCTGGCGACTTCTTCAAGTTTGCCGAC
CCGAAGGGCGCCTTCGACTTGGGCTTTGACTACACCTTCGGCTGCGCCATGCATCCCACC
ATGCGTCTGGACTGGGCGGCGACCTGGGCCAAGAACGTCAAGTCGGGCGGCACGCTGGTG
ACGCTGGTGTTCCCGATCAACCCGGCCGCGGACCCCAACGTGGGCCCGCCCTTTCCCATC
TCGCCGGCCCTGTTCCGCACACTCTTGGAGCCGGCTGGCTTCGAGGTTGTGTCCGAGGCG
CCTGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002172A_C01 KCC002172A_c01
         (786 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_850403.1| thiol methyltransferase [Arabidopsis thaliana]       117  3e-25
gb|AAK69760.1|AF387791_1 thiol methyltransferase 1 [Brassica ole...    98  1e-19
gb|AAK69761.1|AF387792_1 thiol methyltransferase 2 [Brassica ole...    96  8e-19
ref|NP_181919.1| thiol methyltransferase [Arabidopsis thaliana] ...    91  2e-17
gb|AAC72357.1| methyl chloride transferase [Batis maritima] gi|4...    89  6e-17

>ref|NP_850403.1| thiol methyltransferase [Arabidopsis thaliana]
          Length = 226

 Score =  117 bits (292), Expect = 3e-25
 Identities = 70/188 (37%), Positives = 103/188 (54%)
 Frame = +1

Query: 211 ENFSDRWEREWSAGVGKGQRWDCSAPSPSLVDLLKSGKVNVTGQRVFVPGCGRGYDLPVF 390
           EN S  WE+ W AG      WD   P+P +  L+++G  ++   R  VPGCG GYD+ V 
Sbjct: 23  ENSSGGWEKSWEAGATP---WDLGKPTPVIAHLVETG--SLPNGRALVPGCGTGYDV-VA 76

Query: 391 RTAGAAQVVGLELAPSAVREAQAYLAELQLPAADAAAIEMIPGDFFKFADPKGAFDLGFD 570
             +    VVGL+++ +AV  +    + L     +A     +  DFF + +P   FDL FD
Sbjct: 77  MASPDRHVVGLDISKTAVERSTKKFSTLP----NAKYFSFLSEDFFTW-EPAEKFDLIFD 131

Query: 571 YTFGCAMHPTMRLDWAATWAKNVKSGGTLVTLVFPINPAADPNVGPPFPISPALFRTLLE 750
           YTF CA  P +R  WA    K +K GG L+TL+FPI+   + + GPP+ +S + +  +L 
Sbjct: 132 YTFFCAFEPGVRPLWAQRMEKLLKPGGELITLMFPID---ERSGGPPYEVSVSEYEKVLI 188

Query: 751 PAGFEVVS 774
           P GFE +S
Sbjct: 189 PLGFEAIS 196

>gb|AAK69760.1|AF387791_1 thiol methyltransferase 1 [Brassica oleracea]
           gi|14583123|gb|AAK69762.1|AF387793_1 thiol
           methyltransferase 1 [Brassica oleracea]
          Length = 226

 Score = 98.2 bits (243), Expect = 1e-19
 Identities = 67/199 (33%), Positives = 102/199 (50%), Gaps = 1/199 (0%)
 Frame = +1

Query: 181 PDRELPGGEPENFSDR-WEREWSAGVGKGQRWDCSAPSPSLVDLLKSGKVNVTGQRVFVP 357
           P  E+    PE   +  WE+ W  G+     WD    +P +V L+ S  + +   R  VP
Sbjct: 18  PPEEVAKFLPETVEEGGWEKCWEDGITP---WDQGRATPLVVHLVDSSSLPLG--RALVP 72

Query: 358 GCGRGYDLPVFRTAGAAQVVGLELAPSAVREAQAYLAELQLPAADAAAIEMIPGDFFKFA 537
           GCG G+D+ V   +    VVGL+++ SA+ +A    AE    +  A     +  DFF + 
Sbjct: 73  GCGGGHDV-VAMASPERFVVGLDISESALEKA----AETYGSSPKAKYFTFVKEDFFTWR 127

Query: 538 DPKGAFDLGFDYTFGCAMHPTMRLDWAATWAKNVKSGGTLVTLVFPINPAADPNVGPPFP 717
            P   FDL FDY   CA+ P MR  WA +  + +K  G L+TL++PI    D + GPP+ 
Sbjct: 128 -PNELFDLIFDYVVFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI---TDHDGGPPYK 183

Query: 718 ISPALFRTLLEPAGFEVVS 774
           ++ + +  +L P GF+ VS
Sbjct: 184 VAVSTYEDVLVPVGFKAVS 202

>gb|AAK69761.1|AF387792_1 thiol methyltransferase 2 [Brassica oleracea]
          Length = 226

 Score = 95.5 bits (236), Expect = 8e-19
 Identities = 63/182 (34%), Positives = 95/182 (51%)
 Frame = +1

Query: 229 WEREWSAGVGKGQRWDCSAPSPSLVDLLKSGKVNVTGQRVFVPGCGRGYDLPVFRTAGAA 408
           WE+ W  GV     WD    +P +V L++S  + +   R  VPGCG G+D+ V   +   
Sbjct: 35  WEKCWEDGVTP---WDQGRATPLVVHLVESSSLPLG--RGLVPGCGGGHDV-VAMASPER 88

Query: 409 QVVGLELAPSAVREAQAYLAELQLPAADAAAIEMIPGDFFKFADPKGAFDLGFDYTFGCA 588
            VVGL+++ SA+ +A    AE    +  A     +  DFF +  P   FDL FDY   CA
Sbjct: 89  YVVGLDISESALEKA----AETYGSSPKAKYFTFVKEDFFTWR-PNELFDLIFDYVVFCA 143

Query: 589 MHPTMRLDWAATWAKNVKSGGTLVTLVFPINPAADPNVGPPFPISPALFRTLLEPAGFEV 768
           + P  R  WA    + +K  G L+TL++PI    D + GPP+ ++ + +  +L P GF+ 
Sbjct: 144 IEPETRPAWAKAMYELLKPDGELITLMYPI---TDHDGGPPYKVAVSTYEDVLVPVGFKA 200

Query: 769 VS 774
           VS
Sbjct: 201 VS 202

>ref|NP_181919.1| thiol methyltransferase [Arabidopsis thaliana]
           gi|7486489|pir||T00671 probable methyl chloride
           transferase [imported] - Arabidopsis thaliana
           gi|3212849|gb|AAC23400.1| putative methyl chloride
           transferase [Arabidopsis thaliana]
           gi|14994241|gb|AAK73255.1| putative methyl chloride
           transferase [Arabidopsis thaliana]
           gi|21592478|gb|AAM64428.1| putative methyl chloride
           transferase [Arabidopsis thaliana]
          Length = 227

 Score = 90.9 bits (224), Expect = 2e-17
 Identities = 61/182 (33%), Positives = 92/182 (50%)
 Frame = +1

Query: 229 WEREWSAGVGKGQRWDCSAPSPSLVDLLKSGKVNVTGQRVFVPGCGRGYDLPVFRTAGAA 408
           WE+ W   +     WD    +P +V L+ +  + +   R  VPGCG G+D+ V   +   
Sbjct: 36  WEKCWEEEITP---WDQGRATPLIVHLVDTSSLPLG--RALVPGCGGGHDV-VAMASPER 89

Query: 409 QVVGLELAPSAVREAQAYLAELQLPAADAAAIEMIPGDFFKFADPKGAFDLGFDYTFGCA 588
            VVGL+++ SA+ +A     E    +  A     +  D F +  P   FDL FDY F CA
Sbjct: 90  FVVGLDISESALAKAN----ETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCA 144

Query: 589 MHPTMRLDWAATWAKNVKSGGTLVTLVFPINPAADPNVGPPFPISPALFRTLLEPAGFEV 768
           + P MR  WA +  + +K  G L+TL++PI    D   GPP+ +  + F  +L P GF+ 
Sbjct: 145 IEPEMRPAWAKSMYELLKPDGELITLMYPI---TDHVGGPPYKVDVSTFEEVLVPIGFKA 201

Query: 769 VS 774
           VS
Sbjct: 202 VS 203

>gb|AAC72357.1| methyl chloride transferase [Batis maritima]
           gi|4588479|gb|AAD26120.1|AF109128_1 methyl chloride
           transferase [Batis maritima]
          Length = 230

 Score = 89.4 bits (220), Expect = 6e-17
 Identities = 57/185 (30%), Positives = 97/185 (51%)
 Frame = +1

Query: 220 SDRWEREWSAGVGKGQRWDCSAPSPSLVDLLKSGKVNVTGQRVFVPGCGRGYDLPVFRTA 399
           S  WE+ W   V +   WD   P+P ++ L+K+  +     +  VPGCG GYD+ V    
Sbjct: 34  SGGWEKCW---VEEVIPWDLGVPTPLVLHLVKNNAL--PNGKGLVPGCGGGYDV-VAMAN 87

Query: 400 GAAQVVGLELAPSAVREAQAYLAELQLPAADAAAIEMIPGDFFKFADPKGAFDLGFDYTF 579
               +VGL+++ +A+++A+   + +     +++    +  D F +  P+  FD  FDY F
Sbjct: 88  PERFMVGLDISENALKKARETFSTMP----NSSCFSFVKEDVFTWR-PEQPFDFIFDYVF 142

Query: 580 GCAMHPTMRLDWAATWAKNVKSGGTLVTLVFPINPAADPNVGPPFPISPALFRTLLEPAG 759
            CA+ P MR  W     + +K  G L+TL++PI    +   GPPF +S + +  +L P G
Sbjct: 143 FCAIDPKMRPAWGKAMYELLKPDGELITLMYPI---TNHEGGPPFSVSESEYEKVLVPLG 199

Query: 760 FEVVS 774
           F+ +S
Sbjct: 200 FKQLS 204



EST assemble image


clone accession position
1 LC099c06_r AV625877 1 423
2 HC093b11_r AV638965 24 439
3 MX221d09_r BP090274 24 307
4 MX027a04_r BP087162 70 448
5 MX005h10_r BP086291 326 787




Chlamydomonas reinhardtii
Kazusa DNA Research Institute