KCC002170A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002170A_C01 KCC002170A_c01
CAATACATAAAAGAGCCATATATCTACTGTCTTCCCATAAACCCTGGCTGTGTAAGAGCG
AGCTACAAATTTTCCCGCGAAGCTTCCACCCTTGCCAACGCGGGAGTAAGCCCCTGCATC
AAGCAAAGGGCGCACGTTAGAGCCTTGGATCTTGCTGGGGTCAACACAGGAGCCACAGCT
GCGAGCCCGCTGAAATGTCTGGCGTCGCACGCTCACGCTTGCAAGAGGAGCGGAAAGCCT
GGCGGAGGGATAAGCCGTTCGGCTTCCATGCTCGACCAGAAACCGCAGACGACGGGAGCG
TGAACCTGATGAAGTGGAAGTGCCACATCCCCGGGAAACAAGGCACGGACTGGGAGGGCG
GCTTCTACCCGCTCACCATGGAGTTCAGCGAGGACTACCCCACCAAGCCGCCCAAGTGCA
AGTTCCCCGCGGGCTTCTTCCACCCCAACATCTACCCCTCCGGTACCGTGTGCCTCAGCA
TCCTCAACGAGGACGAGGGCTGGCGGCCCTCCATCACCATCAAGCAGCTGCTGTTGGGCA
TCCAGGAGCTGCTGGACACGCCCAAnCGCGGCAGCCCCGCCCAGTCCGACGCCTTCGTGC
T


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002170A_C01 KCC002170A_c01
         (601 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_191346.1| ubiquitin-conjugating enzyme, putative [Arabido...   226  2e-58
gb|AAL58113.1|AC092697_1 putative ubiquitin-conjugating enzyme [...   224  9e-58
gb|AAN74837.1| Putative ubiquitin-conjugating enzyme [Oryza sati...   223  2e-57
emb|CAD29823.2| putative ubiquitin-conjugating enzyme [Populus e...   218  5e-56
dbj|BAC78820.1| ubiquitin-conjugating enzyme9 [Coprinopsis cinerea]   203  1e-51

>ref|NP_191346.1| ubiquitin-conjugating enzyme, putative [Arabidopsis thaliana]
           gi|11272416|pir||T46009 E2 ubiquitin-conjugating-like
           enzyme Ahus5 - Arabidopsis thaliana
           gi|1174162|gb|AAA86642.1| ubiquitin-conjugating enzyme
           gi|3746915|gb|AAC64116.1| E2 ubiquitin-conjugating-like
           enzyme [Arabidopsis thaliana] gi|6729530|emb|CAB67615.1|
           E2 ubiquitin-conjugating-like enzyme Ahus5 [Arabidopsis
           thaliana] gi|14596101|gb|AAK68778.1| E2
           ubiquitin-conjugating-like enzyme Ahus5 [Arabidopsis
           thaliana] gi|28059255|gb|AAO30040.1| E2
           ubiquitin-conjugating-like enzyme Ahus5 [Arabidopsis
           thaliana]
          Length = 160

 Score =  226 bits (576), Expect = 2e-58
 Identities = 98/133 (73%), Positives = 114/133 (85%)
 Frame = +3

Query: 198 SGVARSRLQEERKAWRRDKPFGFHARPETADDGSVNLMKWKCHIPGKQGTDWEGGFYPLT 377
           SG+AR RL EERK+WR++ P GF A+PET  DG+VNLM W C IPGK GTDWEGGF+PLT
Sbjct: 3   SGIARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPLT 62

Query: 378 MEFSEDYPTKPPKCKFPAGFFHPNIYPSGTVCLSILNEDEGWRPSITIKQLLLGIQELLD 557
           M FSEDYP+KPPKCKFP GFFHPN+YPSGTVCLSILNED GWRP+IT+KQ+L+GIQ+LLD
Sbjct: 63  MHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDLLD 122

Query: 558 TPXRGSPAQSDAF 596
           TP    PAQ+D +
Sbjct: 123 TPNPADPAQTDGY 135

>gb|AAL58113.1|AC092697_1 putative ubiquitin-conjugating enzyme [Oryza sativa (japonica
           cultivar-group)] gi|31433271|gb|AAP54809.1| putative
           ubiquitin-conjugating enzyme [Oryza sativa (japonica
           cultivar-group)]
          Length = 160

 Score =  224 bits (570), Expect = 9e-58
 Identities = 97/132 (73%), Positives = 112/132 (84%)
 Frame = +3

Query: 201 GVARSRLQEERKAWRRDKPFGFHARPETADDGSVNLMKWKCHIPGKQGTDWEGGFYPLTM 380
           G+AR RL EERKAWR++ P GF A+PET  DGS NLM W C IPGKQGTDWEGG+YPLT+
Sbjct: 4   GIARGRLAEERKAWRKNHPHGFVAKPETMADGSANLMIWHCTIPGKQGTDWEGGYYPLTL 63

Query: 381 EFSEDYPTKPPKCKFPAGFFHPNIYPSGTVCLSILNEDEGWRPSITIKQLLLGIQELLDT 560
            FSEDYP+KPPKCKFP GFFHPN+YPSGTVCLSILNED GWRP+IT+KQ+L+GIQ+LLD 
Sbjct: 64  HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 123

Query: 561 PXRGSPAQSDAF 596
           P    PAQ+D +
Sbjct: 124 PNPADPAQTDGY 135

>gb|AAN74837.1| Putative ubiquitin-conjugating enzyme [Oryza sativa (japonica
           cultivar-group)]
          Length = 160

 Score =  223 bits (567), Expect = 2e-57
 Identities = 96/132 (72%), Positives = 113/132 (84%)
 Frame = +3

Query: 201 GVARSRLQEERKAWRRDKPFGFHARPETADDGSVNLMKWKCHIPGKQGTDWEGGFYPLTM 380
           G+AR RL EERKAWR++ P GF A+PET  DG+VNLM W C IPGKQGTDWEGG++PLT+
Sbjct: 4   GIARGRLAEERKAWRKNHPHGFVAKPETLADGTVNLMIWHCTIPGKQGTDWEGGYFPLTL 63

Query: 381 EFSEDYPTKPPKCKFPAGFFHPNIYPSGTVCLSILNEDEGWRPSITIKQLLLGIQELLDT 560
            FSEDYP+KPPKCKFP GFFHPN+YPSGTVCLSILNED GWRP+IT+KQ+L+GIQ+LLD 
Sbjct: 64  HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 123

Query: 561 PXRGSPAQSDAF 596
           P    PAQ+D +
Sbjct: 124 PNPADPAQTDGY 135

>emb|CAD29823.2| putative ubiquitin-conjugating enzyme [Populus euramericana]
          Length = 160

 Score =  218 bits (555), Expect = 5e-56
 Identities = 93/132 (70%), Positives = 112/132 (84%)
 Frame = +3

Query: 201 GVARSRLQEERKAWRRDKPFGFHARPETADDGSVNLMKWKCHIPGKQGTDWEGGFYPLTM 380
           G+AR RL EERK+WR++ P GF A+PET  DG+VNLM W C IPGK GTDWEGG++PLT+
Sbjct: 4   GIARGRLAEERKSWRKNHPHGFVAKPETQPDGTVNLMVWHCTIPGKLGTDWEGGYFPLTL 63

Query: 381 EFSEDYPTKPPKCKFPAGFFHPNIYPSGTVCLSILNEDEGWRPSITIKQLLLGIQELLDT 560
            FSEDYP+KPPKCKFP GFFHPN+YPSGTVCLSILNED GWRP+IT+KQ+L+GIQ+LLD 
Sbjct: 64  NFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 123

Query: 561 PXRGSPAQSDAF 596
           P    PAQ++ +
Sbjct: 124 PNPADPAQTEGY 135

>dbj|BAC78820.1| ubiquitin-conjugating enzyme9 [Coprinopsis cinerea]
          Length = 158

 Score =  203 bits (517), Expect = 1e-51
 Identities = 90/134 (67%), Positives = 108/134 (80%)
 Frame = +3

Query: 195 MSGVARSRLQEERKAWRRDKPFGFHARPETADDGSVNLMKWKCHIPGKQGTDWEGGFYPL 374
           MSG+ R RL EERK WR+D PFGF+A+P  ADDGS+NLM+W+  IPGK  T WEGG + L
Sbjct: 1   MSGICRMRLAEERKQWRKDHPFGFYAKPTKADDGSMNLMEWEVGIPGKANTPWEGGLFKL 60

Query: 375 TMEFSEDYPTKPPKCKFPAGFFHPNIYPSGTVCLSILNEDEGWRPSITIKQLLLGIQELL 554
           TM F EDYP+KPPKCKF    FHPN+YPSGTVCLSIL+E++ W+P+ITIKQ+LLGIQ+LL
Sbjct: 61  TMTFPEDYPSKPPKCKFVPPLFHPNVYPSGTVCLSILDEEKSWKPAITIKQILLGIQDLL 120

Query: 555 DTPXRGSPAQSDAF 596
           D P    PAQSDA+
Sbjct: 121 DDPNVNDPAQSDAY 134



EST assemble image


clone accession position
1 LC060f09_r AV623225 1 485
2 LC084d06_r AV624909 1 515
3 LC099c02_r AV625874 5 449
4 LC070b08_r AV623896 16 459
5 LC091a11_r AV625335 18 427
6 LC091a10_r AV625334 18 450
7 LC063a10_r AV623389 22 495
8 LC034d12_r AV621329 22 538
9 LCL048e03_r AV628888 24 351
10 LC021d03_r AV620378 25 540
11 LC056f10_r AV622930 29 548
12 MX016g12_r BP086789 31 541
13 LC025a08_r AV620653 40 601
14 HC092f11_r AV638927 40 461




Chlamydomonas reinhardtii
Kazusa DNA Research Institute