KCC002166A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002166A_C01 KCC002166A_c01
tgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtggtgtgcggacctcgcgtcagggcggcc
cctgtaccatatatgctcTGAGTCCTTGCTTTGTTTCGGAATAGGAACATGCCTGGCGTG
CCACGCCCCAGGCATTGCTCTAGGCAGGCAGCAACACGCCGCATGGCTGGTGCTGAGAGC
GAAAGGGGTCCTTTGCTTCTTTCCTTTCTTCTTATAATGCATTGCCGTACGCATGTGGTG
CTGGGTGTTCGGCAACTTGTGCCGCGCTGACCGCATCTTGTTAGTTGTTGAGGTCGAGGT
GTGTGGGTTTGTAGGACAGCAGCAGGGCGTGGGTGCTTCGGCATGCGAGTGGGTGTGCCG
GCATTGCGTTGCTTGATGGCATCACGCCTGCGGGCGCTGGAGAGAATACAGGCGCGCCTG
GGTGCACTGAGTAGCTCGCAGGCACCGCGCCACGTCGCCGCAAGATCAGCGTAAGCGAGT
GGTTTCAATCCTCTGGGTGTTTGTTTGGCTGTGGGCTCGTGGAGAGTCCCAATACAGTTT
TGACTCGCGACATTGCACACATGGAGGTGTTAAATTCTGGCAGTGGTGGAGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002166A_C01 KCC002166A_c01
         (594 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87052.1| unnamed protein product [Homo sapiens]                 39  0.042
gb|AAM74237.1|AF522293_1 mitogen [Streptococcus canis phage phisc1]    39  0.071
ref|NP_010058.1| Hub1 target; Hbt1p [Saccharomyces cerevisiae] g...    38  0.093
gb|AAB70753.1| thermal hysteresis protein isoform YL-4 (2-20) pr...    38  0.12
dbj|BAC87289.1| unnamed protein product [Homo sapiens]                 38  0.12

>dbj|BAC87052.1| unnamed protein product [Homo sapiens]
          Length = 415

 Score = 39.3 bits (90), Expect = 0.042
 Identities = 33/132 (25%), Positives = 42/132 (31%), Gaps = 7/132 (5%)
 Frame = -1

Query: 375 QATQCRHTHSHAEAPTPCCCPTNPHTSTSTTNKMRSARHKLPNTQHHMRTAMHYKKKGKK 196
           Q   C HTH H   PT     T+ HT T T  ++    H   +   H  T +H       
Sbjct: 182 QIHTCTHTHIHIHMPTHTRTYTHMHTHTLTCTQI----HIYTHIYMHAHTPIHSHIHTWT 237

Query: 195 QRTPFALSTSHAACCCLPRAMPGAWHARHVPIPKQSKDSEHIWYRGRPDARSAHHTH--- 25
                  + +H   C         +   H  +        H        A    HTH   
Sbjct: 238 HTHAHTYTHAHIHVCTHIHMHIHTYTHMHTHMDTYPHTHIHTCTHMHSHAHINTHTHAHI 297

Query: 24  ----HTHTHTHT 1
               HTHTHTHT
Sbjct: 298 HMHMHTHTHTHT 309

>gb|AAM74237.1|AF522293_1 mitogen [Streptococcus canis phage phisc1]
          Length = 183

 Score = 38.5 bits (88), Expect = 0.071
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 233 MWCWVFGNLCRADRILLVVEVEVCGFVGQQQGVGASACEWVCRHC 367
           +WCW  G+ CRA  ++  ++   CG +G  +  G S+C + C  C
Sbjct: 123 LWCWCDGSWCRAFGLVCWLDCFWCGRIGCNRWRGCSSCRYRCGIC 167

>ref|NP_010058.1| Hub1 target; Hbt1p [Saccharomyces cerevisiae]
           gi|2131367|pir||S67786 hypothetical protein YDL223c -
           yeast (Saccharomyces cerevisiae)
           gi|1431375|emb|CAA98802.1| unnamed protein product
           [Saccharomyces cerevisiae]
          Length = 1046

 Score = 38.1 bits (87), Expect = 0.093
 Identities = 29/109 (26%), Positives = 40/109 (36%)
 Frame = -1

Query: 570 TPPCVQCRESKLYWDSPRAHSQTNTQRIETTRLR*SCGDVARCLRATQCTQARLYSLQRP 391
           T P     +SK+    P +H  +N +   T   R S GD      AT    +   +   P
Sbjct: 132 TTPAATSEQSKVKTSPPTSHEHSNIKASPTAH-RHSKGDAGHPSIATTHNHSTSKAATSP 190

Query: 390 QA*CHQATQCRHTHSHAEAPTPCCCPTNPHTSTSTTNKMRSARHKLPNT 244
                      HTH H+ A T     T+ H S  TT+   +  H   NT
Sbjct: 191 VT---------HTHGHSSATTSPVTHTHGHASVKTTSPTNTHEHSKANT 230

>gb|AAB70753.1| thermal hysteresis protein isoform YL-4 (2-20) precursor [Tenebrio
           molitor]
          Length = 148

 Score = 37.7 bits (86), Expect = 0.12
 Identities = 29/96 (30%), Positives = 40/96 (41%)
 Frame = -1

Query: 567 PPCVQCRESKLYWDSPRAHSQTNTQRIETTRLR*SCGDVARCLRATQCTQARLYSLQRPQ 388
           P  + C  SK    +      TN  R  T      C +   CL AT CT +         
Sbjct: 50  PNAITCTGSKNCVRATTCTGSTNCNRATT------CTNSKGCLEATTCTGSTH------- 96

Query: 387 A*CHQATQCRHTHSHAEAPTPCCCPTNPHTSTSTTN 280
             CH+AT C ++    EA T C   +N +T+T+ TN
Sbjct: 97  --CHRATTCTNSKDCFEA-TTCTGSSNCYTATTCTN 129

>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
          Length = 377

 Score = 37.7 bits (86), Expect = 0.12
 Identities = 38/152 (25%), Positives = 53/152 (34%), Gaps = 8/152 (5%)
 Frame = -1

Query: 432 TQCTQARLYSLQRPQA*C--HQATQCRHTHSHAEAPTPCCCPTNPHTSTSTTNKMRSARH 259
           TQCT +  ++     +    H     RHTHSHA       C T+PH  T T +      H
Sbjct: 83  TQCTSSHSHTCSHTHSLTCPHTLAPTRHTHSHA-------C-THPHVQTHTASAYTFTTH 134

Query: 258 KLPNTQHHMRTAMHYKKKGKKQRTPFALSTSHAACCCLPRAMPGAWHARHVP------IP 97
                  H  + + +         P A + +HA     P   P   H R  P      I 
Sbjct: 135 SHTPGHTHSCSHLIHTHSHAHSHPPNAPTHTHAHTL-RPTYCP---HTRSHPMHLLTLIR 190

Query: 96  KQSKDSEHIWYRGRPDARSAHHTHHTHTHTHT 1
             +    H+         +  HT HT +H HT
Sbjct: 191 PLTPAHTHLTPGSHTHVHTPAHTPHTRSHNHT 222

 Score = 35.0 bits (79), Expect = 0.79
 Identities = 46/179 (25%), Positives = 58/179 (31%), Gaps = 30/179 (16%)
 Frame = -1

Query: 450 ARCLRATQCTQAR-----LYSLQRPQA*CH-QATQCRHTHSHAEAPTP------------ 325
           A  LR T C   R     L +L RP    H   T   HTH H  A TP            
Sbjct: 167 AHTLRPTYCPHTRSHPMHLLTLIRPLTPAHTHLTPGSHTHVHTPAHTPHTRSHNHTCLYL 226

Query: 324 ---CCCPT--------NPHTSTSTTNKMRSARHKLPNTQHHMRTAMHYKKKGKKQRTPFA 178
               C  T        +PHT   + +   +  H    T HH  T +H         T   
Sbjct: 227 LTHACTNTPAYTSYTAHPHTLHCSPSHTHAPAHTHMLTPHHSLTHIH-SHMIAPTHTSHT 285

Query: 177 LSTSHAACCCLPRAMPGAWHARHVPIPKQSKDSEHIWYRGRPDARSAHHTHHT-HTHTH 4
           L+ +H        + P A    H         S       RP + +  HT HT H+ TH
Sbjct: 286 LARTHLLTHISRYSAPHAHTCSHT--------SHITQLHTRPCSHTCAHTPHTIHSRTH 336



EST assemble image


clone accession position
1 LC082c01_r AV624756 1 518
2 LC069f05_r AV623858 79 579
3 HC091b04_r AV638811 195 594




Chlamydomonas reinhardtii
Kazusa DNA Research Institute