KCC002165A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002165A_C01 KCC002165A_c01
GACTTATGGCAATTACAGTGCCCTCAGGGGACAGGACACGCTCAAGTGCCAGGCGGTATG
TATGCCATCACATCTCCCTATGTCGTCCTAACCCCGCTTCACACCCTAGCCACCCAACCC
CGTACAATCAACGTCACTCTATGCGACAACCTGCCTCGCTGCTACTGGCAGCTCGTCAAC
ACTATATCATATGGTTGTAGATCAATTAGTTGATCACAGCTCCTCCTGCACCCCACACTG
CAATTCACGTAGGATAAGACTCTTTCGTCCACAAGCGAATGCGGAAGGGCGGATTGCAGC
CCGAGATCCAGAGGGCGATGTCTTTCACGCCCGACCCAGCTCACCGCCTTGTTGCCTAGG
CATCTCACTGCCGCATGCCGCCAAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002165A_C01 KCC002165A_c01
         (385 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB63609.1| putative nitrate transporter [Oryza sativa (japo...    35  0.26
ref|NP_071717.1| tenomodulin; myodulin [Mus musculus] gi|1820286...    33  1.3
ref|NP_071626.1| myodulin [Rattus norvegicus] gi|18202874|sp|Q9E...    33  1.3
ref|NP_071427.1| tenomodulin protein; myodulin protein; likely o...    33  1.3
sp|Q9H2S6|TNMD_HUMAN Tenomodulin (TeM) (hTeM) (Chondromodulin-I ...    33  1.3

>dbj|BAB63609.1| putative nitrate transporter [Oryza sativa (japonica
           cultivar-group)] gi|20146235|dbj|BAB89017.1| putative
           nitrate transporter [Oryza sativa (japonica
           cultivar-group)]
          Length = 543

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 110 PPNPVQSTSLYATTCLAATGSSSTLYHM 193
           PPN  QS  LYA  CL A G+  T Y+M
Sbjct: 101 PPNAAQSAVLYAALCLLAAGNGGTRYNM 128

>ref|NP_071717.1| tenomodulin; myodulin [Mus musculus]
           gi|18202865|sp|Q9EP64|TNMD_MOUSE Tenomodulin (TeM)
           (mTeM) (Chondromodulin-I like protein) (ChM1L) (mChM1L)
           (Myodulin) gi|25392197|pir||JC7603 tenomodulin - mouse
           gi|11065920|gb|AAG28393.1|AF191768_1 myodulin [Mus
           musculus] gi|12083890|gb|AAG48938.1|AF219993_1
           tenomodulin [Mus musculus] gi|12698295|dbj|BAB21757.1|
           ChM1L [Mus musculus] gi|13905244|gb|AAH06919.1|
           Tenomodulin [Mus musculus]
           gi|15077274|gb|AAK83108.1|AF291655_1 chondromodulin-IB
           [Mus musculus] gi|29436712|gb|AAH49944.1| Tenomodulin
           [Mus musculus]
          Length = 317

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 275 LVDERVLSYVNCSVG---CRRSCDQLIDLQPYDIVLTSCQ*QRGRLSHRVTLIVRGWVAR 105
           ++DER    + C  G   CRR C+ L+   PY         Q GR+  RV +    WVAR
Sbjct: 258 MLDERGYCCIYCRRGNRYCRRVCEPLLGYYPYPYCY-----QGGRVICRVIMPCNWWVAR 312

Query: 104 V 102
           +
Sbjct: 313 M 313

>ref|NP_071626.1| myodulin [Rattus norvegicus] gi|18202874|sp|Q9ESC2|TNMD_RAT
           Tenomodulin (TeM) (rTeM) (Chondromodulin-I like protein)
           (ChM1L) (rChM1L) (Myodulin)
           gi|11065922|gb|AAG28394.1|AF191769_1 myodulin [Rattus
           norvegicus] gi|12698297|dbj|BAB21758.1| ChM1L [Rattus
           norvegicus]
          Length = 317

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 275 LVDERVLSYVNCSVG---CRRSCDQLIDLQPYDIVLTSCQ*QRGRLSHRVTLIVRGWVAR 105
           ++DER    + C  G   CRR C+ L+   PY         Q GR+  RV +    WVAR
Sbjct: 258 MLDERGYCCIYCRRGNRYCRRVCEPLLGYYPYPYCY-----QGGRVICRVIMPCNWWVAR 312

Query: 104 V 102
           +
Sbjct: 313 M 313

>ref|NP_071427.1| tenomodulin protein; myodulin protein; likely ortholog of mouse
           tenomodulin [Homo sapiens]
           gi|11065924|gb|AAG28395.1|AF191770_1 myodulin [Homo
           sapiens]
          Length = 317

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 275 LVDERVLSYVNCSVG---CRRSCDQLIDLQPYDIVLTSCQ*QRGRLSHRVTLIVRGWVAR 105
           ++DER    + C  G   CRR C+ L+   PY         Q GR+  RV +    WVAR
Sbjct: 258 MLDERGYCCIYCRRGNRYCRRVCEPLLGYYPYPYCY-----QGGRVICRVIMPCNWWVAR 312

Query: 104 V 102
           +
Sbjct: 313 M 313

>sp|Q9H2S6|TNMD_HUMAN Tenomodulin (TeM) (hTeM) (Chondromodulin-I like protein) (ChM1L)
           (hChM1L) (Myodulin) gi|25392187|pir||JC7597
           chondromodulin-I like protein, ChM1L - human
           gi|12231527|gb|AAG49144.1|AF234259_1 tenomodulin [Homo
           sapiens] gi|12698293|dbj|BAB21756.1| ChM1L [Homo
           sapiens] gi|15077276|gb|AAK83109.1|AF291656_1
           chondromodulin-IB [Homo sapiens]
           gi|37182534|gb|AAQ89069.1| AKNP771 [Homo sapiens]
          Length = 317

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 275 LVDERVLSYVNCSVG---CRRSCDQLIDLQPYDIVLTSCQ*QRGRLSHRVTLIVRGWVAR 105
           ++DER    + C  G   CRR C+ L+   PY         Q GR+  RV +    WVAR
Sbjct: 258 MLDERGYCCIYCRRGNRYCRRVCEPLLGYYPYPYCY-----QGGRVICRVIMPCNWWVAR 312

Query: 104 V 102
           +
Sbjct: 313 M 313



EST assemble image


clone accession position
1 HC091a06_r AV638804 1 385
2 MXL079a06_r BP097650 1 271




Chlamydomonas reinhardtii
Kazusa DNA Research Institute