KCC002162A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002162A_C01 KCC002162A_c01
ctcctctcggccgtatgaccctcaGCTTGACTCCGACCGGGGCGCCCTTCCCTCGTTGCG
CCCATCCCAAATTGCAGCAGCCTTCCGCACGCACCATGGCACACAAGTTGCCACGCGCAT
ACTTCACAAGTTTGGGTTGTGAATCTTAGCTGGGCTCCCGTGGCGTGCACACCGCGGTGT
GGCCGCCGAGGAGCACCGGCGCCGCCCAGTTCCAGATCGTTCGCGCATTGCGATGGCACT
GTGCTAACCGCTGGTTGTCGCCTCCCTGCCGCATGCTGTGGTGGACTGGTGACGATTTGC
GGAAAGCACAGCGCACCGCAATCGCGTGCGCTCGTTTCATGCCTGCATTTCACTTGCGTG
TGGAGGGTCTGCTTTGGGGCGCCCCTGGCAGCGGTCTGATCGGACGTGACCATTGCATAT
GCGACTGTGACTGACGTGACGTGAAGCCTATGTGTGTGTGTGGTGCGTTAATGGTGCGCG
CTGCTGCTGCGGCCACGTATGCCACGTCAGAGCTACCGGGGCTGCCTTGCCGTGACTATC
CTGTTTATAATCGGACGATTCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002162A_C01 KCC002162A_c01
         (562 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_631261.1| putative hydrolase. [Streptomyces coelicolor A3...    37  0.18
ref|NP_735878.1| Unknown [Streptococcus agalactiae NEM316] gi|24...    35  0.69
ref|NP_688369.1| conserved hypothetical protein [Streptococcus a...    35  0.69
ref|XP_304430.1| hypothetical protein XP_304430 [Homo sapiens]         35  0.90
ref|NP_721253.1| conserved hypothetical protein [Streptococcus m...    35  0.90

>ref|NP_631261.1| putative hydrolase. [Streptomyces coelicolor A3(2)]
           gi|8546916|emb|CAB94628.1| putative hydrolase.
           [Streptomyces coelicolor A3(2)]
          Length = 286

 Score = 37.0 bits (84), Expect = 0.18
 Identities = 29/101 (28%), Positives = 45/101 (43%), Gaps = 12/101 (11%)
 Frame = -1

Query: 274 MRQGGDNQRLAQCHRNART--IWNWAAPVLLG-GHTAVCTPR---------EPS*DSQPK 131
           +R GG+   L   H + RT   W+  APVL+  G T VC            EP+ D  P 
Sbjct: 19  VRYGGEGPPLLLLHGHPRTSATWHRVAPVLVRRGFTVVCPDLRGYGRSRGPEPAADHAPH 78

Query: 130 LVKYARGNLCAMVRAEGCCNLGWAQRGKGAPVGVKLRVIRP 8
             +   G++  +++A G    G     +GA V ++L +  P
Sbjct: 79  SKRAVAGDMAGVMQALGHRRFGLVGHDRGAAVALRLVLDHP 119

>ref|NP_735878.1| Unknown [Streptococcus agalactiae NEM316]
           gi|24413021|emb|CAD47100.1| Unknown [Streptococcus
           agalactiae NEM316]
          Length = 392

 Score = 35.0 bits (79), Expect = 0.69
 Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
 Frame = -1

Query: 208 WAAPVLLGGHTAVCTPREP-S*DSQPKLVKYARGNLCAMVRAEGCCNLGWAQRG 50
           W A ++ GGH  V  P E    D Q K + Y+ GN  +  R E   ++ W +RG
Sbjct: 255 WGADIIFGGHPHVVEPSEVIKKDGQKKFIIYSMGNFISNQRLETVDDI-WTERG 307

>ref|NP_688369.1| conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
           gi|22534398|gb|AAN00242.1|AE014254_22 conserved
           hypothetical protein [Streptococcus agalactiae 2603V/R]
          Length = 392

 Score = 35.0 bits (79), Expect = 0.69
 Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
 Frame = -1

Query: 208 WAAPVLLGGHTAVCTPREP-S*DSQPKLVKYARGNLCAMVRAEGCCNLGWAQRG 50
           W A ++ GGH  V  P E    D Q K + Y+ GN  +  R E   ++ W +RG
Sbjct: 255 WGADIIFGGHPHVVEPSEVIKKDGQKKFIIYSMGNFISNQRLETVDDI-WTERG 307

>ref|XP_304430.1| hypothetical protein XP_304430 [Homo sapiens]
          Length = 251

 Score = 34.7 bits (78), Expect = 0.90
 Identities = 32/107 (29%), Positives = 42/107 (38%), Gaps = 11/107 (10%)
 Frame = -3

Query: 290 TSPPQHAAGRRQPAVSTVPSQCANDLELGGAGAPRRPHRGVHAT--------GAQLRFTT 135
           ++PP  A  RR  +  T  S         G   P  P RG+H          GA+ +   
Sbjct: 3   STPPPSAHARRCRSAPTHRSS-------PGGCRPGNPDRGIHGEAGKGKGRGGAEFQRKG 55

Query: 134 QTCEVCAWQLVCH--GACGRLLQ-FGMGATREGRPGRSQAEGHTAER 3
             C V    + C   G  G L    G G  REG P + + +G TAER
Sbjct: 56  TGCPVTGGDVQCDPAGMSGCLGPGVGQGCCREGSPRKRREDGDTAER 102

>ref|NP_721253.1| conserved hypothetical protein [Streptococcus mutans UA159]
           gi|24377219|gb|AAN58559.1|AE014926_2 conserved
           hypothetical protein [Streptococcus mutans UA159]
          Length = 393

 Score = 34.7 bits (78), Expect = 0.90
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 208 WAAPVLLGGHTAVCTPRE-PS*DSQPKLVKYARGNLCAMVRAEGCCNLGWAQRG 50
           W A V+ GGH  V  P E    D Q K + Y+ GN  +    E   N  W +RG
Sbjct: 256 WGADVIFGGHPHVAEPSEVVKQDGQKKFIIYSMGNFISNQSYENLQNY-WTERG 308



EST assemble image


clone accession position
1 HC090d08_r AV638758 1 424
2 LC040f03_r AV621760 25 562




Chlamydomonas reinhardtii
Kazusa DNA Research Institute