KCC002157A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002157A_C01 KCC002157A_c01
GCAATTCCGATTGGCATTTAAAATAATCACTTATTGGTATCTCGCATAGTTTGAGGAAAA
TGCAGACAGCAAACAGCGTGGCTGGCCAGCGCCTGGCCTTGCGCCAGGGGCGTTGTTGCG
TTCTTGGCCTGTGCGTGCTCCAGTGAGCCGCTCCACGCGCGTGCGCGTCTTTGCCAACGC
GGCCGCTGCGGCTGCTGCATCTGGAACACCTGTGCCGAAGAACAGCATCCTGGTTGTCGG
AGCCACGGGCACGCTCGGTCGCCAAATTGTGCGTCGCGCGCTGGACGATGGCTACGATGT
TCGTTGCCTGGTTCGCCCCCGTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAA
GGTCGTGAACGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAA
CGCTGTCATCGACTGCGCAACTGCGCGGCCCGAGGAGTCTACGCGCAAAGTTGATTGGGA
GGGCAAGGTGGCGCTCATCCAGTCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002157A_C01 KCC002157A_c01
         (505 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_195251.1| vestitone reductase-related [Arabidopsis thalia...   174  6e-43
ref|ZP_00111826.1| COG0702: Predicted nucleoside-diphosphate-sug...   112  3e-24
ref|NP_488792.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...   109  2e-23
ref|NP_043673.1| ORF319 [Odontella sinensis] gi|1351766|sp|P4953...   108  5e-23
ref|ZP_00072916.1| COG0702: Predicted nucleoside-diphosphate-sug...   107  1e-22

>ref|NP_195251.1| vestitone reductase-related [Arabidopsis thaliana]
           gi|7486019|pir||T06132 hypothetical protein F23E12.190 -
           Arabidopsis thaliana gi|3080425|emb|CAA18744.1| putative
           protein [Arabidopsis thaliana]
           gi|7270477|emb|CAB80242.1| putative protein [Arabidopsis
           thaliana] gi|18087583|gb|AAL58922.1|AF462834_1
           AT4g35250/F23E12_190 [Arabidopsis thaliana]
           gi|22137054|gb|AAM91372.1| At4g35250/F23E12_190
           [Arabidopsis thaliana]
          Length = 395

 Score =  174 bits (441), Expect = 6e-43
 Identities = 88/118 (74%), Positives = 95/118 (79%)
 Frame = +2

Query: 149 RSTRVRVFANAAAAAAASGTPVPKNSILVVGATGTLGRQIVRRALDDGYDVRCLVRPRPN 328
           RS  V V  +AAA   A GTPV   SILVVGATGTLGRQIVRRALD+GYDVRCLVRPRP 
Sbjct: 56  RSIVVPVTCSAAAVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPA 115

Query: 329 PADFLRDWGAKVVNGDLTDPSSIPACLVGVNAVIDCATARPEESTRKVDWEGKVALIQ 502
           PADFLRDWGA VVN DL+ P +IPA LVG++ VIDCAT RPEE  + VDWEGKVALIQ
Sbjct: 116 PADFLRDWGATVVNADLSKPETIPATLVGIHTVIDCATGRPEEPIKTVDWEGKVALIQ 173

>ref|ZP_00111826.1| COG0702: Predicted nucleoside-diphosphate-sugar epimerases [Nostoc
           punctiforme]
          Length = 332

 Score =  112 bits (280), Expect = 3e-24
 Identities = 56/96 (58%), Positives = 75/96 (77%), Gaps = 2/96 (2%)
 Frame = +2

Query: 224 SILVVGATGTLGRQIVRRALDDGYDVRCLVRPRPNPADFLRDWGAKVVNGDLTDPSSIPA 403
           ++L+VGATGTLGRQ+ RRA+D+GY VRCLVR     A FL++WGA++V G+L  P ++ A
Sbjct: 2   TLLIVGATGTLGRQVARRAIDEGYKVRCLVRSSKKAA-FLKEWGAELVPGNLRYPDTLAA 60

Query: 404 CLVGVNAVIDCATARPEE--STRKVDWEGKVALIQS 505
            LVGV  VID +T+RP +  S ++VDWEGKVALIQ+
Sbjct: 61  ALVGVTQVIDASTSRPTDSLSIKQVDWEGKVALIQA 96

>ref|NP_488792.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25534778|pir||AH2399
           hypothetical protein all4752 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17133889|dbj|BAB76451.1|
           ORF_ID:all4752~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 328

 Score =  109 bits (273), Expect = 2e-23
 Identities = 54/96 (56%), Positives = 73/96 (75%), Gaps = 2/96 (2%)
 Frame = +2

Query: 224 SILVVGATGTLGRQIVRRALDDGYDVRCLVRPRPNPADFLRDWGAKVVNGDLTDPSSIPA 403
           ++L+VGATGTLGRQ+ RRA+D+GY VRCLVR     A FL++WGA++V GDL  P ++  
Sbjct: 2   TLLIVGATGTLGRQVARRAIDEGYKVRCLVRSAKRAA-FLKEWGAELVRGDLCQPQTLVE 60

Query: 404 CLVGVNAVIDCATARPEES--TRKVDWEGKVALIQS 505
            L GV AVID AT+R  +S   ++VDWEG++ALIQ+
Sbjct: 61  ALEGVTAVIDAATSRATDSLTIKQVDWEGQIALIQA 96

>ref|NP_043673.1| ORF319 [Odontella sinensis] gi|1351766|sp|P49534|YC39_ODOSI
           HYPOTHETICAL 36.3 KD PROTEIN YCF39 (ORF319)
           gi|7484310|pir||S78332 conserved hypothetical protein
           319 - Odontella sinensis chloroplast
           gi|1185222|emb|CAA91705.1| ORF319 [Odontella sinensis]
          Length = 319

 Score =  108 bits (269), Expect = 5e-23
 Identities = 51/96 (53%), Positives = 74/96 (76%), Gaps = 2/96 (2%)
 Frame = +2

Query: 224 SILVVGATGTLGRQIVRRALDDGYDVRCLVRPRPNPADFLRDWGAKVVNGDLTDPSSIPA 403
           S+L++G TGTLGRQ+V +AL  GY VRCLVR     A+FL++WGA+++ GDL+ P +IP 
Sbjct: 2   SLLIIGGTGTLGRQVVLQALTKGYQVRCLVR-NFRKANFLKEWGAELIYGDLSRPETIPP 60

Query: 404 CLVGVNAVIDCATARPE--ESTRKVDWEGKVALIQS 505
           CL G+ AVID +T+RP   ++ ++VDW+GK ALI++
Sbjct: 61  CLQGITAVIDTSTSRPSDLDTLKQVDWDGKCALIEA 96

>ref|ZP_00072916.1| COG0702: Predicted nucleoside-diphosphate-sugar epimerases
           [Trichodesmium erythraeum IMS101]
          Length = 325

 Score =  107 bits (266), Expect = 1e-22
 Identities = 52/95 (54%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
 Frame = +2

Query: 227 ILVVGATGTLGRQIVRRALDDGYDVRCLVRPRPNPADFLRDWGAKVVNGDLTDPSSIPAC 406
           +L++G+TGTLGRQIVR ALD+GY+VRC++R   + A FL++WGA++V G+L  P ++   
Sbjct: 3   LLILGSTGTLGRQIVRHALDEGYEVRCVIRSY-SKASFLKEWGAELVGGNLCKPKTLIPA 61

Query: 407 LVGVNAVIDCATARPEE--STRKVDWEGKVALIQS 505
           L G++AVID ATAR  +  S ++VDWEGKV+LIQ+
Sbjct: 62  LEGIDAVIDAATARATDALSIKQVDWEGKVSLIQT 96



EST assemble image


clone accession position
1 HC091d04_r AV638828 1 502
2 MX254d07_r BP092450 110 590
3 MX258f12_r BP092757 117 610
4 HC089d03_r AV638680 191 598




Chlamydomonas reinhardtii
Kazusa DNA Research Institute