Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002154A_C01 KCC002154A_c01
(532 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P06333|TCB1_RABIT T-cell receptor beta chain ANA 11 gi|70018|... 36 0.27
pir||T09059 notch4 - mouse gi|2564947|gb|AAB82004.1| notch4 [Mus... 35 0.46
gb|AAC52631.1| notch4 intracellular domain; expressed only in tu... 35 0.79
ref|XP_303442.1| hypothetical protein XP_303442 [Homo sapiens] 35 0.79
gb|AAC52630.1| Notch4 35 0.79
>sp|P06333|TCB1_RABIT T-cell receptor beta chain ANA 11 gi|70018|pir||RWRBB T-cell
receptor beta chain precursor (ANA 11) - rabbit
Length = 319
Score = 36.2 bits (82), Expect = 0.27
Identities = 34/126 (26%), Positives = 49/126 (37%), Gaps = 6/126 (4%)
Frame = -2
Query: 393 PTRQTLCIRPSGR---TMRGMRWCTFVQPPGTLPNQFSLMLQPGT*ARQYGRACTHPAAC 223
P R+ L + P T M + F+ P T ++ S +L P T + CTH
Sbjct: 19 PRRKWLTMTPEHARPPTTTAMLYDGFLWPSHT--HRHSYLLHPHTHVCTHTHTCTHTHIH 76
Query: 222 IAAVAHVQPATKTQECTH---HCLTLPLLPPSTHAGAQEPSAPCTRASPRRR*CLAHVAV 52
+ + T T C H H LTL P T+A + P+ R+ A +
Sbjct: 77 ASTHVCIHTHTFTHLCIHTLTHALTLTCAPTRTYAHTRAPTHVHPHKPRPRQLSAALLLP 136
Query: 51 MPLQFP 34
PL FP
Sbjct: 137 TPLHFP 142
>pir||T09059 notch4 - mouse gi|2564947|gb|AAB82004.1| notch4 [Mus musculus]
Length = 1964
Score = 35.4 bits (80), Expect = 0.46
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Frame = +3
Query: 54 RQRARGISGGEVMPVCKARMAPARPRVY*EATRGV*GSDACIPVFSWLVAHAPR-----L 218
R AR GG P C+ A ARPR G AC+ +W V R
Sbjct: 1825 RAHARTTPGGGAAPRCRTLSAGARPR----------GGGACLQARTWSVDLGARGGKVYA 1874
Query: 219 RCTQR-GACMHGRTAEPKCLAGA*GKIGLEAFQ 314
RC R G+C T + AG+ G+ G A Q
Sbjct: 1875 RCRSRSGSCGGPTTRGRRFSAGSRGRRGARASQ 1907
>gb|AAC52631.1| notch4 intracellular domain; expressed only in tumors due to viral
insertion; similar to mouse int-3, GenBank Accession
Number M80456
Length = 554
Score = 34.7 bits (78), Expect = 0.79
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Frame = +3
Query: 54 RQRARGISGGEVMPVCKARMAPARPRVY*EATRGV*GSDACIPVFSWLVAHAPR-----L 218
R AR GG P C+ A ARPR G AC+ +W V R
Sbjct: 415 RAHARTTPGGGSAPRCRTLSAGARPR----------GGGACLQARTWSVDLGARGGKVYA 464
Query: 219 RCTQR-GACMHGRTAEPKCLAGA*GKIGLEAFQ 314
RC R G+C T + AG+ G+ G A Q
Sbjct: 465 RCRSRSGSCGGPTTRGRRFSAGSRGRRGARASQ 497
>ref|XP_303442.1| hypothetical protein XP_303442 [Homo sapiens]
Length = 668
Score = 34.7 bits (78), Expect = 0.79
Identities = 17/45 (37%), Positives = 21/45 (45%)
Frame = -2
Query: 216 AVAHVQPATKTQECTHHCLTLPLLPPSTHAGAQEPSAPCTRASPR 82
A AH P T+ ++ T P P+ H GA PS P R PR
Sbjct: 580 ARAHGLPGTRGKDAVEPGSTSPTTGPTVHTGAPSPSPPARRPPPR 624
>gb|AAC52630.1| Notch4
Length = 1964
Score = 34.7 bits (78), Expect = 0.79
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Frame = +3
Query: 54 RQRARGISGGEVMPVCKARMAPARPRVY*EATRGV*GSDACIPVFSWLVAHAPR-----L 218
R AR GG P C+ A ARPR G AC+ +W V R
Sbjct: 1825 RAHARTTPGGGSAPRCRTLSAGARPR----------GGGACLQARTWSVDLGARGGKVYA 1874
Query: 219 RCTQR-GACMHGRTAEPKCLAGA*GKIGLEAFQ 314
RC R G+C T + AG+ G+ G A Q
Sbjct: 1875 RCRSRSGSCGGPTTRGRRFSAGSRGRRGARASQ 1907
