KCC002144A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002144A_C01 KCC002144A_c01
agccactCACAGGGCTAAGCCGCTGGGTGCAGCTGCTACTTTCATCGATCTCCCTTTTCA
AGCTCCTAACTATGGTTCGTTACTCGTCTCGTTGAACACGCGATTTAGTTCAAGGCCTAT
AAGCGCCCCTGTGCAGGCGATTTCATATTTTCGGCGGCCGGCGGGCGCTGGTGCGCGTCT
GCGGTGCCCCCGCCACTGCGGGAATAGCCAGGCAGTCAGTCCTGGGCCTCTGTGGCTATT
CGGACTGGCCAAGAAATCTTAGCTGGCTTGGGGCGCGAACATGTAGCGCGGTGTTTTCGC
TTGATGGCGTCGAATACGAGAGTTCAAGTTATAGCTGGTCCCGTGCGCCGGGCGCACGGC
GATGTACCATTGGCTTTGGGCTGCATGCGCGCCGACCGCGATCTTGTGGATCATGGTTGT
GCGGTTTTGTTCGCGGAGGGGTGTGGACCTTTTGGCCGCCTGGGGGCCGAGGAATGTCAA
ATTCTGCGCAGCTCTGTCTTGAGCGAAGGCTGCTGGAAGTACTGGATGTGCGAGGTGTGA
GTTTTTTAAGTGTGGGTATAGCTGAGCGATTTTAACTCGGCGCAGGGCAACGGCTCCGCG
CTGCTGACAGGAGCCTTGAATCGGCATCTGATCATTGAACACCAACGGCAAGGCGCATCG
GCCGCTGCGCTGCATAACCGTGTAGGGCAGGGATTACCACGTGTGTGATTTATCAGATCC
TGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002144A_C01 KCC002144A_c01
         (723 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK94670.1| subtilisin-like protein [Toxoplasma gondii]             39  0.11
pir||S31719 proline-rich protein - African clawed frog gi|64956|...    39  0.11
gb|AAH57751.1| Unknown (protein for MGC:69127) [Xenopus laevis]        38  0.18
ref|XP_151291.1| hypothetical protein XP_151291 [Mus musculus]         38  0.18
ref|XP_340896.1| similar to WIRE protein; WASP-binding protein [...    37  0.24

>gb|AAK94670.1| subtilisin-like protein [Toxoplasma gondii]
          Length = 795

 Score = 38.5 bits (88), Expect = 0.11
 Identities = 43/156 (27%), Positives = 58/156 (36%), Gaps = 11/156 (7%)
 Frame = -3

Query: 583  APS*NRSAIPTLKKLTPRT--SSTSSSLRSRQSCAEFDIPRPPGGQKVH--TPPRTKPHN 416
            APS      P+    +PRT  S+ S S R+         P PP        TPP   PH 
Sbjct: 597  APSPPPPTPPSAPSPSPRTPPSAPSPSPRTPPCAPSPPPPTPPCAPSPSPPTPPPGSPHK 656

Query: 415  HDPQ-------DRGRRACSPKPMVHRRAPGARDQL*LELSYSTPSSENTALHVRAPSQLR 257
             +PQ        R  R+  P P     APGA            P S+  +  V   S   
Sbjct: 657  PEPQTPVYPEVPRSTRSPPPSPPPTESAPGA------------PPSDTPSCRVPPCSSSP 704

Query: 256  FLGQSE*PQRPRTDCLAIPAVAGAPQTRTSARRPPK 149
              G    P +  T    +P+++ +P T  S  +PPK
Sbjct: 705  RSGSQPKPPQDNTTTPKMPSLS-SPPTEHSTAQPPK 739

>pir||S31719 proline-rich protein - African clawed frog gi|64956|emb|CAA48321.1|
           Proline rich protein [Xenopus laevis]
          Length = 379

 Score = 38.5 bits (88), Expect = 0.11
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
 Frame = -3

Query: 595 SRCPAPS*NRSAIPTLKKLTPRTSSTSSSLRSRQSCAEFDIPRPPGGQKVHTPP----RT 428
           +R   P   R+  P+L  L+   SSTSS ++   S      P PPG ++   PP      
Sbjct: 147 NRSSPPEVGRAHRPSLPDLSRPPSSTSSGMKHSSSAPP---PPPPGRRQAGAPPAPSQNA 203

Query: 427 KPHNHD---PQDRGRRACSPKPM------VHRRAPGARDQ 335
           KP+N +   P   G RA +  P+      ++ R+P A  Q
Sbjct: 204 KPYNREKPLPPTPGHRAPAAPPVKPPPSPINSRSPSAHSQ 243

>gb|AAH57751.1| Unknown (protein for MGC:69127) [Xenopus laevis]
          Length = 426

 Score = 37.7 bits (86), Expect = 0.18
 Identities = 38/132 (28%), Positives = 55/132 (40%), Gaps = 13/132 (9%)
 Frame = -3

Query: 691 PALHGYAAQRPMRLAVGVQ*SDADSRLLSAARSRCPAPS*NRSAIPTLKKLTPRTSSTSS 512
           PA    A + P+  + G    D+DS       +R   P   R+  P+L  LT   SSTSS
Sbjct: 116 PAARSSAPRPPV--SGGRPQDDSDS-----GSNRSSPPEVGRAHRPSLPDLTRPPSSTSS 168

Query: 511 SLRSRQSCAEFDIPRPPGGQKVHTPP----RTKPHNHD---PQDRGRRACS------PKP 371
            ++   S      P PPG ++   PP      KP+N +   P   G RA +      P  
Sbjct: 169 GMKHSSSAPP---PPPPGRRQAGAPPAPSQNAKPYNREKPLPPTPGHRAPAAPQVKPPPS 225

Query: 370 MVHRRAPGARDQ 335
            ++ R+P    Q
Sbjct: 226 PINTRSPSTHSQ 237

>ref|XP_151291.1| hypothetical protein XP_151291 [Mus musculus]
          Length = 329

 Score = 37.7 bits (86), Expect = 0.18
 Identities = 37/126 (29%), Positives = 52/126 (40%), Gaps = 8/126 (6%)
 Frame = -3

Query: 694 IPALHGYAAQRPMRLAVGVQ*SDADSRLLSAAR--------SRCPAPS*NRSAIPTLKKL 539
           +P L    A RP++ A+G   +++ S +  A R        SR PAP   R  +      
Sbjct: 32  LPGLFFPTATRPLQKALGSSQAESRSPVRPAPRRTRIKFSHSRVPAPGKPRRLVSE---- 87

Query: 538 TPRTSSTSSSLRSRQSCAEFDIPRPPGGQKVHTPPRTKPHNHDPQDRGRRACSPKPMVHR 359
            PR  S++ S     + AE   P+PP       P  T   +  P+ R RR  SP P    
Sbjct: 88  -PRPGSSARSGPHEDARAERR-PQPPSA-----PTATSRRHRSPEPRPRRPHSPLPAARN 140

Query: 358 RAPGAR 341
              GAR
Sbjct: 141 PQRGAR 146

>ref|XP_340896.1| similar to WIRE protein; WASP-binding protein [Rattus norvegicus]
          Length = 429

 Score = 37.4 bits (85), Expect = 0.24
 Identities = 54/192 (28%), Positives = 72/192 (37%), Gaps = 3/192 (1%)
 Frame = -3

Query: 694 IPALHGYAAQRPMRLAVGVQ*SDADSRLLSAARSRCPAPS*NRSAIPTLKKLTPRTSSTS 515
           +P+    A + P+  A G    D+DS       SR   P   R   P+L  L+ R ++TS
Sbjct: 104 VPSSRAAAPRPPVSAASGRPHDDSDS-------SRASLPELPRMQRPSLPDLS-RPNTTS 155

Query: 514 SSLRSRQSCAEFDIPRPPGGQKVHTPPRTKP-HNHDPQDRGRRACSPKPMVHRRAPGARD 338
            +     S A    P PP G++ + PP   P H++  Q   R    P     R  PG   
Sbjct: 156 GTGMKHSSSAP---PPPPPGRRANAPPTPLPLHSNKAQAYNREKPLPPTPGQRVHPGREG 212

Query: 337 QL*LELSYSTPSSENTALHVRAPSQLRFLGQSE*PQRPRTDCLAIPAVAGAPQTRTSARR 158
                     PS  N       PS     GQS  P  P       P V   P + T+   
Sbjct: 213 HPAPPPVKPPPSPVNVR---TGPS-----GQSLAP--PPPPYRQPPGVPNGPSSPTNESA 262

Query: 157 P--PKI*NRLHR 128
           P  P+  N LHR
Sbjct: 263 PELPQRHNSLHR 274



EST assemble image


clone accession position
1 LCL049a07_r AV628922 1 279
2 LC068b10_r AV623753 8 511
3 LC018a04_r AV620131 218 723
4 HC084h04_r AV638317 219 648
5 HC095a09_r AV639105 234 663




Chlamydomonas reinhardtii
Kazusa DNA Research Institute