KCC002142A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002142A_C01 KCC002142A_c01
tgaaacccagttGCCTAGGCTTATAGTGGAAGAATGGCCTCGCTCTTTGCTCGCCCCGCG
CTTGCGCTGCCGCGCATCGGACACCAGGAGGCGTGCTGCAGCACCTCGATTACGTTTGCT
CGTTTTGCTGCTGCCCGCACTGCTTGTCGCGTCGCCCCGGTCTCTCCTGTCCCATCGGCG
GAGGTTTCTGGGCGCTCCCAGCTACTCGTCGCCCGCGGCATTCCCGTTTCGGGCCCGGGA
GCTATTAGCTCATCTTCCGGAGGCGTGGATGGCCAGGTCACCAGCGTGCTGATGGACTCG
ATGAAGGCGAAGATTTGCGAGGCCCTGGAGACCAACGACTGCTCTATCTCGGATGTGTAT
GGCGACGGCCGGCACGTGAGCATTGACGTGGTGTCGAAGCTGTTCGAGGGGAAGAACAGC
ATGCAGCGGCAGCGCATGGTTTACCAAGGCCATCTGGCTGGAGCTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002142A_C01 KCC002142A_c01
         (467 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_197258.1| expressed protein [Arabidopsis thaliana] gi|113...    67  1e-10
ref|NP_712291.1| BolA protein [Leptospira interrogans serovar la...    44  0.001
ref|ZP_00006418.1| COG0271: Stress-induced morphogen (activity u...    42  0.004
dbj|BAB32758.1| hypothetical protein [Pseudomonas resinovorans]        41  0.008
emb|CAC17637.1| dJ1182A14.1 (similar to rat Espin) [Homo sapiens]      41  0.008

>ref|NP_197258.1| expressed protein [Arabidopsis thaliana] gi|11346181|pir||T51460
           hypothetical protein K10A8_40 - Arabidopsis thaliana
           gi|9755781|emb|CAC01900.1| putative protein [Arabidopsis
           thaliana] gi|21618086|gb|AAM67136.1| unknown
           [Arabidopsis thaliana]
          Length = 177

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 9/125 (7%)
 Frame = +1

Query: 100 STSITFARFAAARTACRVAPVSPVPSAEVSGRSQLLVARGIPVSGPGAI-------SSSS 258
           S S    RF  +R       VS V S + +  S +   R   VSG GA+       S+ S
Sbjct: 35  SFSAPLVRFTNSRC------VSAVLSRKETAPSSIYGNRVSRVSGFGALDIRSLNFSTKS 88

Query: 259 GGVD--GQVTSVLMDSMKAKICEALETNDCSISDVYGDGRHVSIDVVSKLFEGKNSMQRQ 432
             ++  G +   LM SM+ KI E L     +++D+ GDGRHV I+VVS  FEG++++ RQ
Sbjct: 89  SQINDAGSIDQTLMQSMELKIKEQLNAESVTVTDMSGDGRHVCINVVSSAFEGQSAVNRQ 148

Query: 433 RMVYQ 447
           RMVY+
Sbjct: 149 RMVYK 153

>ref|NP_712291.1| BolA protein [Leptospira interrogans serovar lai str. 56601]
           gi|24195819|gb|AAN49309.1|AE011382_10 BolA protein
           [Leptospira interrogans serovar lai str. 56601]
          Length = 83

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = +1

Query: 283 SVLMDSMKAKICEALETNDCSISDVYGDGRHVSIDVVSKLFEGKNSMQRQRMVYQ 447
           ++ +D +K KI   L  +  +I D Y DG H+   V+ K FEGK+ +++ RMVY+
Sbjct: 8   TMTIDEIKNKIESGLPDSKVTILDPYKDGVHIKAIVIYKGFEGKSILEQHRMVYE 62

>ref|ZP_00006418.1| COG0271: Stress-induced morphogen (activity unknown) [Rhodobacter
           sphaeroides]
          Length = 80

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 25/60 (41%), Positives = 36/60 (59%), Gaps = 3/60 (5%)
 Frame = +1

Query: 295 DSMKAKICEALETNDCSISDVYGDGRHVSIDVVSKLFEGKNSMQRQRMVY---QGHLAGA 465
           D ++A+  EA  T    I+D+ GDG H + +V+ + F G N +Q QRMVY   QG + GA
Sbjct: 10  DLIRARFPEAKIT----ITDLAGDGNHWAAEVIDESFRGLNRVQAQRMVYASLQGKMDGA 65

>dbj|BAB32758.1| hypothetical protein [Pseudomonas resinovorans]
          Length = 544

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = -2

Query: 439 PCAAAACCSSPRTASTPRQCSRAGRRHTHPR*SSRWSPGPRKSSPSSSP----SARW*PG 272
           P A   C  S    ++P+  S A   +  PR  S W+  P  + P + P    +A+  P 
Sbjct: 352 PTAPTPCSPSAPATASPK--SPANHCNGPPRKPSPWAAAPTPTCPPAKPCACTAAKPSPP 409

Query: 271 HPRLRKMS**LPGPKRECRGRRVAGSAQKPPPMGQERPGR 152
            P  ++     PGP R+ RG    G+ ++ PP    RP R
Sbjct: 410 WPASQQADGIGPGPDRQRRGGGHPGATERHPPQRPRRPER 449

>emb|CAC17637.1| dJ1182A14.1 (similar to rat Espin) [Homo sapiens]
          Length = 1130

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 49/149 (32%), Positives = 60/149 (39%), Gaps = 11/149 (7%)
 Frame = +2

Query: 38   PRSLLAPRLRCRASDTRR----RAAAPRLRLLVLLLPALLVASPRSLLSHRRRFLGAPSY 205
            P S+ AP   C A  TRR    RAA+PR  L           +PRS     RR    P+ 
Sbjct: 742  PCSITAPPTSC-AHWTRRPRAVRAASPRSPL-----------APRSASPSCRRTTWRPAL 789

Query: 206  SSPAAFPFRARELLAHLPEAWMARSPAC*WTR*RRRFAR-------PWRPTTALSRMCMA 364
            +SPA  P  AR         W   SP   W R R R AR        WR     +R C A
Sbjct: 790  ASPAPPPPTAR---------WPTGSPWTPWARLRHRIARRRYLSPSSWRAGRPSARNCAA 840

Query: 365  TAGT*ALTWCRSCSRGRTACSGSAWFTKA 451
            +  T       +C+  R+A   S+W T A
Sbjct: 841  SRTT------STCA--RSASFTSSWSTGA 861



EST assemble image


clone accession position
1 MX246a01_r BP091905 1 467
2 LC093g06_r AV625500 13 417
3 HC083h07_r AV638252 32 457




Chlamydomonas reinhardtii
Kazusa DNA Research Institute