KCC002141A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002141A_C01 KCC002141A_c01
GTAATATCGCAACCTTAAAGAATAGCGACGCGATATACTGTGTCTTGCGCCCGGCGAACT
CGGACTTGCCGAATTGATGTTGCCGGGCGCGAGCCCACGACAATATGACTTACTTTTAGA
GTTAAGTCATTGTTGTAAAGTGCATGAGACAAGGTGATACATAAGGAACGCGTGAAATCT
GCGACTTGGGACTCACGCAGGAACAGTGACCAGCGGCCCAATCCCGCGAACCCTCCTCCC
GGTTCAAAACCGACCGCGGCAACGTGCCAAACCCGCGCTGCACTAAAACACGGTTATCCT
TTACACCGAACCTCTGAACAACCCTGCCAAAAATGATGCTGAAGGCCTCTACCGTGACCA
CTCTGCCCGCGCGCAAGGGTGTCCGCGCCGTGGCTCGCTCGGCTGCTCTGCCGGTGCCCG
TTAACAAGCGTGCCGTTCTGGTGCGCGCTGAGCCCGAGAGCTCGACCTCGGCTGAGGATC
CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGGGCAAGTGGG
AGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATCATCGTTGGTGTCATCGTGG
CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCGTCAACAAGG
GCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACC
CCGCTGAGCGCGAGAGCGTCAAGAAGAGCATTGACGCGTTCGTCAAGTCCGTCACCGGCG
AGAAGTAAACTGCCTGGGGAGGTTGCTCTTGCTTGAGTAGCGGCTCGCCATCATGTGACG
CCTCGTTCGCCACGTGGGGCTCTATGAATGGGGGATGTACAGTGGTAGAGGCGGGCGGAC
GGGTGTGATACCCCGGTGTTTTGGCCGTGTGCAATTCTGCGGGCCTGTGTAGATTATTGC
ATTTTTTGGACGCGGATGCTGTTGTCCCGCGGTAAATTTTTGGCCCGTCTCTGTTCTAGG
CTCGGACCAATAGAACGCTGATTGCGCTATGCCGGCGATGAACGTCACGAGTGTGGGTGA
GAGCTGCTTTATTCGTACCTTGACAGCCTGCGTCGCTGGGCCAGAAGAGAGCGCGTTATG
ATTGTGCGCGCATATTCTGTGTAACCTAAGAGAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002141A_C01 KCC002141A_c01
         (1175 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83086.1| unknown protein [Oryza sativa (japonica cultivar...    60  6e-08
ref|NP_566086.1| expressed protein [Arabidopsis thaliana] gi|748...    59  1e-07
gb|AAM63765.1| unknown [Arabidopsis thaliana]                          58  4e-07
ref|NP_564603.1| expressed protein [Arabidopsis thaliana] gi|253...    57  8e-07
gb|AAB00107.1| unknown                                                 54  7e-06

>dbj|BAC83086.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 150

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 47/166 (28%), Positives = 77/166 (46%)
 Frame = +3

Query: 282 TKTRLSFTPNL*TTLPKMMLKASTVTTLPARKGVRAVARSAALPVPVNKRAVLVRAEPES 461
           T  RL+  P +   LP+   + +TV    A  G++   R++        R V +RA   +
Sbjct: 4   TTCRLAAAPLVLAPLPR---RPTTVAFAVAATGIKYGLRAS--------RGVAIRAADGT 52

Query: 462 STSAEDPSVKLQKQAEEVLKQVQGKWESTDDSEKPAAIAIIVGVIVAQIAIGATIDAVDK 641
            +  E P         EV+K  Q  W   +D     AI +   ++    AIGA I A+D+
Sbjct: 53  GSETEVP---------EVVKAAQDAWAKVEDKYAVTAIGV-AALVGLWTAIGA-IKAIDR 101

Query: 642 IPIVNKGLQLIGVAVTGLFTYRYFTDPAERESVKKSIDAFVKSVTG 779
           +P++   L+L+G+  TG FTYR      +RE++   I +    +TG
Sbjct: 102 LPLLPGVLELVGIGYTGWFTYRNLIFQPDREALVSKIKSTYNEITG 147

>ref|NP_566086.1| expressed protein [Arabidopsis thaliana] gi|7485752|pir||T02683
           hypothetical protein At2g46820 [imported] - Arabidopsis
           thaliana gi|3510256|gb|AAC33500.1| expressed protein
           [Arabidopsis thaliana] gi|17473794|gb|AAL38332.1|
           unknown protein [Arabidopsis thaliana]
           gi|21386997|gb|AAM47902.1| unknown protein [Arabidopsis
           thaliana]
          Length = 174

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 40/143 (27%), Positives = 68/143 (46%)
 Frame = +3

Query: 351 TVTTLPARKGVRAVARSAALPVPVNKRAVLVRAEPESSTSAEDPSVKLQKQAEEVLKQVQ 530
           ++ TLP +   RA   +A     V  R V+ RA  E   +    +     +  E++K  Q
Sbjct: 34  SLPTLPIQSHTRAAKATAYCRKIV--RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQ 91

Query: 531 GKWESTDDSEKPAAIAIIVGVIVAQIAIGATIDAVDKIPIVNKGLQLIGVAVTGLFTYRY 710
             WE  DD  K A  ++    +VA       I A+D++P+V   L+L+G+  TG FTY+ 
Sbjct: 92  EAWEKVDD--KYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKN 149

Query: 711 FTDPAERESVKKSIDAFVKSVTG 779
                +RE++ + + +  K + G
Sbjct: 150 LVFKPDREALFEKVKSTYKDILG 172

>gb|AAM63765.1| unknown [Arabidopsis thaliana]
          Length = 174

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 39/143 (27%), Positives = 67/143 (46%)
 Frame = +3

Query: 351 TVTTLPARKGVRAVARSAALPVPVNKRAVLVRAEPESSTSAEDPSVKLQKQAEEVLKQVQ 530
           ++ TLP +   RA   +A     V  R V+ RA  E   +    +     +  E++K  Q
Sbjct: 34  SLPTLPIQSHTRAAKATAYCRKIV--RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQ 91

Query: 531 GKWESTDDSEKPAAIAIIVGVIVAQIAIGATIDAVDKIPIVNKGLQLIGVAVTGLFTYRY 710
             WE  DD  K A  ++    +VA       I  +D++P+V   L+L+G+  TG FTY+ 
Sbjct: 92  EAWEKVDD--KYAIGSLAFASVVALWGSAGMISPIDRLPLVPGVLELVGIGYTGWFTYKN 149

Query: 711 FTDPAERESVKKSIDAFVKSVTG 779
                +RE++ + + +  K + G
Sbjct: 150 LVFKPDREALFEKVKSTYKDILG 172

>ref|NP_564603.1| expressed protein [Arabidopsis thaliana] gi|25354696|pir||B96562
           unknown protein [imported] - Arabidopsis thaliana
           gi|6850346|gb|AAF29409.1|AC022354_8 unknown protein
           [Arabidopsis thaliana]
           gi|15294156|gb|AAK95255.1|AF410269_1 At1g52220/F9I5_10
           [Arabidopsis thaliana] gi|20453285|gb|AAM19881.1|
           At1g52220/F9I5_10 [Arabidopsis thaliana]
          Length = 156

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 33/117 (28%), Positives = 61/117 (51%)
 Frame = +3

Query: 432 AVLVRAEPESSTSAEDPSVKLQKQAEEVLKQVQGKWESTDDSEKPAAIAIIVGVIVAQIA 611
           +++V+A  ESS S+ D          +V+  +Q  W+ ++D  +   I +    IVA  A
Sbjct: 51  SLMVKASGESSDSSTDL---------DVVSTIQNVWDKSED--RLGLIGLGFAGIVALWA 99

Query: 612 IGATIDAVDKIPIVNKGLQLIGVAVTGLFTYRYFTDPAERESVKKSIDAFVKSVTGE 782
               I A+DK+P+++ G +L+G+  +  FTYRY     +R+ + K +   V  + G+
Sbjct: 100 SLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

>gb|AAB00107.1| unknown
          Length = 164

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 34/154 (22%), Positives = 74/154 (47%)
 Frame = +3

Query: 324 LPKMMLKASTVTTLPARKGVRAVARSAALPVPVNKRAVLVRAEPESSTSAEDPSVKLQKQ 503
           +P +  + S V  LP R   R+   S  +P+ +     L + E   + ++ + +  +   
Sbjct: 18  VPAVSTRCSAVPYLPPRSFGRS---SFTVPLKLVSGNGLQKVELLKTRASSEETSSID-- 72

Query: 504 AEEVLKQVQGKWESTDDSEKPAAIAIIVGVIVAQIAIGATIDAVDKIPIVNKGLQLIGVA 683
             E++  ++ KW+  ++  K   +    G IVA       + A++ +P++ K ++L+G+ 
Sbjct: 73  TNELITDLKEKWDGLEN--KSTVLIYGGGAIVAVWVSSIVVGAINSVPLLPKVMELVGLG 130

Query: 684 VTGLFTYRYFTDPAERESVKKSIDAFVKSVTGEK 785
            TG F YRY    + R+ + + I++  K + G +
Sbjct: 131 YTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164



EST assemble image


clone accession position
1 MX224f02_r BP090482 1 305
2 LC057d05_r AV622982 1 500
3 HC083d05_r AV638215 199 625
4 LC039f03_r AV621683 276 699
5 MX014d08_r BP086688 283 682
6 LC067c12_r AV623689 284 799
7 HC096h03_r AV639247 289 704
8 MX041d06_r BP087686 291 644
9 MX022h07_r BP087014 292 603
10 MX230e02_r BP090879 293 502
11 MX034e03_r BP087437 293 679
12 MX250h01_r BP092187 294 810
13 MX025c11_r BP087101 303 649
14 MX004g02_r BP086235 338 654
15 LC034h10_r AV621359 553 1086
16 LC065c03_r AV623531 676 1182




Chlamydomonas reinhardtii
Kazusa DNA Research Institute